C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2F (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409953 UBE2F-020 ENSG00000184182 9606 + 2:237967081-238041770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonOvaryPlacentaENST00000409953
Transcript ID Breast Colon Ovary Placenta
ENST00000409953 4.629±0.00 6.522±0.00 9.971±0.10 13.624±2.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0001 VISTA 2:237594726-238198955
CIL_0003NH CIL_0003NH_0001 CGP 2:237858893-238042782

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0019788 IDA NEDD8 ligase activity
GO:0045116 IEA protein neddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178627 Ube2f-201 protein_coding Mus_musculus 0 952
ENSMUST00000171112 Ube2f-004 protein_coding Mus_musculus 0 952
ENSMUST00000191368 Ube2f-003 protein_coding Mus_musculus 0 952
ENSMUST00000171165 Ube2f-002 protein_coding Mus_musculus 0 952
ENSMUST00000059743 Ube2f-001 protein_coding Mus_musculus 0 905
ENSMUST00000071825 Gm5434-201 protein_coding Mus_musculus 0 791
ENSMUST00000080066 Gm7099-201 pseudogene Mus_musculus 0 634
ENSMUST00000120831 Gm16016-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000185950 Ube2f-009 retained_intron Mus_musculus 0 414
ENSMUST00000189589 Ube2f-010 retained_intron Mus_musculus 0 289
ENSMUST00000188576 Ube2f-007 retained_intron Mus_musculus 0 274
ENSMUST00000187494 Ube2f-008 retained_intron Mus_musculus 0 217
ENSMUST00000185697 Ube2f-005 retained_intron Mus_musculus 3e-23 113
ENSMUST00000191533 Ube2f-006 protein_coding Mus_musculus 1e-16 92
ENSMUST00000181346 Gm26864-001 processed_pseudogene Mus_musculus 0.000000008 66

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