C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain and WD repeat domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342449 BRWD1-002 ENSG00000185658 9606 - 21:39190219-39313570 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000342449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000342449 1.418±0.00 0.520±0.00 1.730±0.00 1.687±0.13 3.311±1.91 1.827±1.36 1.158±0.28 1.643±0.22 3.153±2.91 4.069±2.69 1.827±1.16 0.945±0.00 2.679±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0001 VISTA 21:38689433-39291200
CIL_0003GK CIL_0003GK_0001 CGP 21:39174769-39321559
CIL_0004KG CIL_0004KG_0001 CGP 21:39184176-39349647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007010 IMP cytoskeleton organization
GO:0008360 IMP regulation of cell shape

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099502 Brwd1-201 protein_coding Mus_musculus 0 5391
ENSMUST00000153398 Brwd1-009 protein_coding Mus_musculus 0 5391
ENSMUST00000113829 Brwd1-001 protein_coding Mus_musculus 0 5391
ENSMUST00000023631 Brwd1-002 protein_coding Mus_musculus 0 5391
ENSMUST00000131322 Brwd1-016 nonsense_mediated_decay Mus_musculus 0 1912
ENSMUST00000124370 Brwd1-014 protein_coding Mus_musculus 0 1714
ENSMUST00000139566 Brwd1-013 nonsense_mediated_decay Mus_musculus 0 1441
ENSMUST00000152197 Brwd1-015 protein_coding Mus_musculus 0 627
ENSMUST00000126629 Brwd1-011 retained_intron Mus_musculus 0 617
ENSMUST00000113827 Brwd1-003 protein_coding Mus_musculus 0 536
ENSMUST00000147655 Brwd1-005 retained_intron Mus_musculus 0 233
ENSMUST00000130823 Brwd1-010 retained_intron Mus_musculus 6e-25 122

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