C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196459 TRAPPC2 9606 - X:13712244-13734635 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359680 TRAPPC2-201 13712244-13734635 protein_coding
  ENST00000380578 TRAPPC2-001 13715497-13722240 retained_intron
  ENST00000380579 TRAPPC2-002 13712247-13734556 protein_coding
  ENST00000458511 TRAPPC2-005 13714358-13734575 protein_coding
  ENST00000517553 TRAPPC2-007 13715800-13716718 retained_intron
  ENST00000518847 TRAPPC2-008 13716550-13734633 protein_coding
  ENST00000519382 TRAPPC2-004 13715537-13734545 retained_intron
  ENST00000519885 TRAPPC2-006 13715837-13734575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359680ENST00000380578ENST00000380579ENST00000518847ENST00000519382ENST00000519885
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359680 2.276±0.00 2.066±0.00 N/A 2.787±1.09 2.505±0.51 1.598±0.76 0.692±0.34 2.955±0.00 1.760±0.42 1.394±0.00 1.062±0.00 2.533±0.57 1.338±0.19 1.707±1.19
ENST00000380578 N/A N/A 0.190±0.00 N/A 0.484±0.00 0.345±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000380579 N/A N/A 0.841±0.00 1.281±0.16 N/A N/A N/A 0.969±0.00 1.819±0.00 0.883±0.00 0.218±0.00 1.478±0.27 0.583±0.00 N/A
ENST00000518847 N/A N/A N/A N/A N/A N/A 0.669±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000519382 N/A N/A N/A N/A 0.989±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.978±0.00 N/A N/A 1.639±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000P1 CIL_0000P1_0002 CGP X:13689121-13734635
CIL_0000OM CIL_0000OM_0002 CGP X:13712244-13769353

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005801 IEA cis-Golgi network
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006888 IEA:NAS ER to Golgi vesicle-mediated transport
GO:0008134 IPI transcription factor binding
GO:0044325 IPI ion channel binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068831 egfl6 EGF-like-domain, multiple 6 protein_coding Danio_rerio
ENSDARG00000097660 trappc2 trafficking protein particle complex 2 protein_coding Danio_rerio
ENSMUSG00000007777 0610009B22Rik RIKEN cDNA 0610009B22 gene protein_coding Mus_musculus
ENSMUSG00000079317 Trappc2 trafficking protein particle complex 2 protein_coding Mus_musculus

Loading