C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359680 TRAPPC2-201 ENSG00000196459 9606 - X:13712244-13734635 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359680
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359680 2.276±0.00 2.066±0.00 2.787±1.09 2.505±0.51 1.598±0.76 0.692±0.34 2.955±0.00 1.760±0.42 1.394±0.00 1.062±0.00 2.533±0.57 1.338±0.19 1.707±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000P1 CIL_0000P1_0002 CGP X:13689121-13734635
CIL_0000OM CIL_0000OM_0002 CGP X:13712244-13769353

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005801 IEA cis-Golgi network
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006888 IEA:NAS ER to Golgi vesicle-mediated transport
GO:0008134 IPI transcription factor binding
GO:0044325 IPI ion channel binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116495 Trappc2-001 protein_coding Mus_musculus 0 590
ENSMUST00000112194 Trappc2-003 protein_coding Mus_musculus 0 582
ENSMUST00000109098 0610009B22Rik-002 protein_coding Mus_musculus 0 516
ENSMUST00000007921 0610009B22Rik-001 protein_coding Mus_musculus 0 516
ENSMUST00000120556 Gm13080-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000154573 Trappc2-004 retained_intron Mus_musculus 0 337
ENSMUST00000112192 Trappc2-002 protein_coding Mus_musculus 0 300
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00001 57
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00001 57

Loading