C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380579 TRAPPC2-002 ENSG00000196459 9606 - X:13712247-13734556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainKidneyLiverLungMuscleOvaryPlacentaENST00000380579
Transcript ID Bladder Brain Kidney Liver Lung Muscle Ovary Placenta
ENST00000380579 0.841±0.00 1.281±0.16 0.969±0.00 1.819±0.00 0.883±0.00 0.218±0.00 1.478±0.27 0.583±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000P1 CIL_0000P1_0002 CGP X:13689121-13734635
CIL_0000OM CIL_0000OM_0002 CGP X:13712244-13769353

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005801 IEA cis-Golgi network
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006888 IEA:NAS ER to Golgi vesicle-mediated transport
GO:0008134 IPI transcription factor binding
GO:0044325 IPI ion channel binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116495 Trappc2-001 protein_coding Mus_musculus 0 584
ENSMUST00000112194 Trappc2-003 protein_coding Mus_musculus 0 582
ENSMUST00000109098 0610009B22Rik-002 protein_coding Mus_musculus 0 516
ENSMUST00000007921 0610009B22Rik-001 protein_coding Mus_musculus 0 516
ENSMUST00000120556 Gm13080-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000154573 Trappc2-004 retained_intron Mus_musculus 0 331
ENSMUST00000112192 Trappc2-002 protein_coding Mus_musculus 0 294
ENSMUST00000168162 Pdgfra-202 protein_coding Mus_musculus 0.00001 57
ENSMUST00000000476 Pdgfra-201 protein_coding Mus_musculus 0.00001 57

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