C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: trafficking protein particle complex 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519885 TRAPPC2-006 ENSG00000196459 9606 - X:13715837-13734575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleTestisENST00000519885
Transcript ID Muscle Testis
ENST00000519885 0.978±0.00 1.639±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000P1 CIL_0000P1_0002 CGP X:13689121-13734635
CIL_0000OM CIL_0000OM_0002 CGP X:13712244-13769353

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005622 IEA intracellular
GO:0006810 IEA transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116495 Trappc2-001 protein_coding Mus_musculus 0 438
ENSMUST00000112194 Trappc2-003 protein_coding Mus_musculus 0 431
ENSMUST00000109098 0610009B22Rik-002 protein_coding Mus_musculus 0 366
ENSMUST00000007921 0610009B22Rik-001 protein_coding Mus_musculus 0 366
ENSMUST00000154573 Trappc2-004 retained_intron Mus_musculus 0 337
ENSMUST00000120556 Gm13080-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000112192 Trappc2-002 protein_coding Mus_musculus 0 300

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