C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A10
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000253293 HOXA10 9606 - 7:27170591-27180261 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283921 HOXA10-001 27170591-27174306 protein_coding
  ENST00000396344 HOXA10-003 27171220-27180261 protein_coding
  ENST00000519593 HOXA10-006 27171777-27172889 processed_transcript
  ENST00000521421 HOXA10-005 27171463-27172889 processed_transcript
  ENST00000524368 HOXA10-004 27171378-27172963 processed_transcript
  ENST00000613671 HOXA10-201 27170592-27174255 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283921ENST00000396344ENST00000524368ENST00000613671
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283921 2.913±0.00 N/A 0.509±0.00 N/A 1.654±0.00 2.463±1.22 N/A N/A 1.472±0.00 N/A 3.086±1.01 N/A 1.758±0.78 N/A
ENST00000396344 N/A N/A 1.030±0.00 N/A 2.107±0.00 N/A N/A N/A 2.837±0.00 0.134±0.00 3.325±0.00 2.416±0.97 2.881±0.00 N/A
ENST00000524368 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.124±0.00 9.179±0.00 N/A 3.116±0.12 N/A
ENST00000613671 7.341±0.00 4.857±0.00 N/A 0.007±0.00 10.391±0.00 12.047±0.00 0.015±0.00 4.003±0.00 2.439±0.00 N/A 6.037±3.64 1.969±1.47 1.915±0.08 1.362±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PA CIL_0003PA_0001 CGP 7:27153716-27175180
CIL_0006I0 CIL_0006I0_0002 CGP 7:27162435-27180013
CIL_0003P7 CIL_0003P7_0001 CGP 7:27170591-27185223

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IEA skeletal system development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 TAS multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007338 IEA single fertilization
GO:0008584 IEA male gonad development
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0030326 IEA embryonic limb morphogenesis
GO:0042826 IPI histone deacetylase binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060065 IEA uterus development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031337 hoxa10b homeo box A10b protein_coding Danio_rerio
ENSMUSG00000000938 Hoxa10 homeobox A10 protein_coding Mus_musculus

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