C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000283921 HOXA10-001 ENSG00000253293 9606 - 7:27170591-27174306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonLiverMusclePlacentaENST00000283921
Transcript ID Adipose Bladder Breast Colon Liver Muscle Placenta
ENST00000283921 2.913±0.00 0.509±0.00 1.654±0.00 2.463±1.22 1.472±0.00 3.086±1.01 1.758±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PA CIL_0003PA_0001 CGP 7:27153716-27175180
CIL_0006I0 CIL_0006I0_0002 CGP 7:27162435-27180013
CIL_0003P7 CIL_0003P7_0001 CGP 7:27170591-27185223

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IEA skeletal system development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007275 TAS multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007338 IEA single fertilization
GO:0008584 IEA male gonad development
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0030326 IEA embryonic limb morphogenesis
GO:0042826 IPI histone deacetylase binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0060065 IEA uterus development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125581 Hoxa10-001 protein_coding Mus_musculus 0 2608
ENSMUST00000126402 Hoxa10-002 processed_transcript Mus_musculus 0 1637
ENSMUST00000121043 Hoxa10-004 protein_coding Mus_musculus 0 926
ENSMUST00000142611 Hoxa10-003 processed_transcript Mus_musculus 0 771
ENSMUST00000174042 Hoxb9-002 protein_coding Mus_musculus 3e-27 128
ENSMUST00000000010 Hoxb9-001 protein_coding Mus_musculus 3e-27 128
ENSDART00000104612 hmx3-001 protein_coding Danio_rerio 0.000001 60

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