C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tubulin, beta 5 class I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001525 Tubb5 10090 - 17:35833921-35838306 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001566 Tubb5-001 35833921-35838306 protein_coding
  ENSMUST00000134978 Tubb5-003 35835901-35838208 protein_coding
  ENSMUST00000156050 Tubb5-002 35836247-35838217 retained_intron
  ENSMUST00000173253 Tubb5-004 35835605-35837060 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001566ENSMUST00000173253
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001566 91.922±44.11 93.876±2.55 96.772±11.26 591.399±499.96 169.882±85.85 98.316±42.41 19.323±2.07 22.224±2.32 124.870±143.29 49.232±7.80 8.934±2.40 246.408±73.41 229.364±141.31 10.034±4.15
ENSMUST00000173253 N/A N/A N/A N/A 52.755±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785
CIL_0001X1 CIL_0001X1_0002 CGP 17:35823230-35838306
CIL_0005ET CIL_0005ET_0002 CGP 17:35833921-35859670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005525 IEA:NAS GTP binding
GO:0005634 IDA nucleus
GO:0005641 IEA nuclear envelope lumen
GO:0005829 TAS cytosol
GO:0005874 IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IDA microtubule-based process
GO:0009987 IEA cellular process
GO:0019904 IEA protein domain specific binding
GO:0032403 IEA protein complex binding
GO:0032794 IEA GTPase activating protein binding
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0042288 IEA MHC class I protein binding
GO:0044297 IEA cell body
GO:0045298 NAS tubulin complex
GO:0051225 IDA spindle assembly
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037997 tubb5 tubulin, beta 5 protein_coding Danio_rerio
ENSG00000196230 TUBB tubulin, beta class I protein_coding Homo_sapiens

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