C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 5 class I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001566 Tubb5-001 ENSMUSG00000001525 10090 - 17:35833921-35838306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001566 91.922±44.11 93.876±2.55 96.772±11.26 591.399±499.96 169.882±85.85 98.316±42.41 19.323±2.07 22.224±2.32 124.870±143.29 49.232±7.80 8.934±2.40 246.408±73.41 229.364±141.31 10.034±4.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0002 VISTA 17:35419853-36021785
CIL_0001X1 CIL_0001X1_0002 CGP 17:35823230-35838306
CIL_0005ET CIL_0005ET_0002 CGP 17:35833921-35859670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005525 IEA:NAS GTP binding
GO:0005634 IDA nucleus
GO:0005641 IEA nuclear envelope lumen
GO:0005829 TAS cytosol
GO:0005874 IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IDA microtubule-based process
GO:0009987 IEA cellular process
GO:0019904 IEA protein domain specific binding
GO:0032403 IEA protein complex binding
GO:0032794 IEA GTPase activating protein binding
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0042288 IEA MHC class I protein binding
GO:0044297 IEA cell body
GO:0045298 NAS tubulin complex
GO:0051225 IDA spindle assembly
GO:0051258 IEA protein polymerization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1332
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1327
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1269
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1230
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1190
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1184
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 835
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 658
ENST00000248151 TUBBP1-001 transcribed_processed_pseudogene Homo_sapiens 0 1685
ENST00000259818 TUBB2B-001 protein_coding Homo_sapiens 0 1314
ENST00000264071 TUBB4A-001 protein_coding Homo_sapiens 0 1290
ENST00000315491 TUBB3-001 protein_coding Homo_sapiens 0 1245
ENST00000317702 TUBB6-001 protein_coding Homo_sapiens 0 1096
ENST00000327892 TUBB-001 protein_coding Homo_sapiens 0 1989
ENST00000330914 TUBB-002 protein_coding Homo_sapiens 0 1884
ENST00000333628 TUBB2A-001 protein_coding Homo_sapiens 0 1330
ENST00000340384 TUBB4B-001 protein_coding Homo_sapiens 0 1301
ENST00000383564 TUBB-001 protein_coding Homo_sapiens 0 1991
ENST00000396384 TUBB-004 protein_coding Homo_sapiens 0 1886
ENST00000396389 TUBB-003 protein_coding Homo_sapiens 0 1882
ENST00000400530 TUBB-004 protein_coding Homo_sapiens 0 1886
ENST00000400531 TUBB-002 protein_coding Homo_sapiens 0 1884
ENST00000400534 TUBB-003 protein_coding Homo_sapiens 0 1882
ENST00000404155 TUBB2BP1-001 unprocessed_pseudogene Homo_sapiens 0 719
ENST00000412136 TUBB-003 protein_coding Homo_sapiens 0 1882
ENST00000413547 TUBB-002 protein_coding Homo_sapiens 0 1884
ENST00000416519 TUBBP6-001 processed_pseudogene Homo_sapiens 0 1415
ENST00000417736 TUBB6-002 retained_intron Homo_sapiens 0 1035
ENST00000419551 TUBB-003 protein_coding Homo_sapiens 0 1882
ENST00000419792 TUBB-001 protein_coding Homo_sapiens 0 1989
ENST00000420400 TUBB-003 protein_coding Homo_sapiens 0 1882
ENST00000420618 TUBB-004 protein_coding Homo_sapiens 0 1886
ENST00000421473 TUBB-001 protein_coding Homo_sapiens 0 1989
ENST00000422650 TUBB-001 protein_coding Homo_sapiens 0 1989
ENST00000422674 TUBB-001 protein_coding Homo_sapiens 0 1989
ENST00000424734 TUBB-003 protein_coding Homo_sapiens 0 1882
ENST00000425102 TUBB-004 protein_coding Homo_sapiens 0 1886
ENST00000425136 TUBB-003 protein_coding Homo_sapiens 0 1882
ENST00000426754 TUBB-003 protein_coding Homo_sapiens 0 1882
ENST00000427480 TUBB-002 protein_coding Homo_sapiens 0 1884
ENST00000427668 TUBBP10-001 processed_pseudogene Homo_sapiens 0 1105
ENST00000432462 TUBB-001 protein_coding Homo_sapiens 0 1989
ENST00000435546 TUBB-002 protein_coding Homo_sapiens 0 1884
ENST00000436335 TUBB-002 protein_coding Homo_sapiens 0 1884
ENST00000436628 TUBB-001 protein_coding Homo_sapiens 0 1989
ENST00000436895 TUBB8P6-001 unprocessed_pseudogene Homo_sapiens 0 630
ENST00000437490 TUBB-002 protein_coding Homo_sapiens 0 1884
ENST00000444441 TUBB-004 protein_coding Homo_sapiens 0 1886
ENST00000446385 TUBB-004 protein_coding Homo_sapiens 0 1886
ENST00000450755 TUBB4AP1-001 processed_pseudogene Homo_sapiens 0 985
ENST00000453350 TUBB-004 protein_coding Homo_sapiens 0 1886
ENST00000454403 TUBBP2-001 processed_pseudogene Homo_sapiens 0 503
ENST00000454454 TUBB-002 protein_coding Homo_sapiens 0 1884
ENST00000454620 TUBB-004 protein_coding Homo_sapiens 0 1886
ENST00000473006 TUBB2B-002 processed_transcript Homo_sapiens 0 1251
ENST00000478631 SCP2-009 nonsense_mediated_decay Homo_sapiens 0 1074
ENST00000489942 TUBB2A-002 processed_transcript Homo_sapiens 0 339
ENST00000518096 TUBBP1-002 processed_transcript Homo_sapiens 0 1760
ENST00000540257 TUBB4A-201 protein_coding Homo_sapiens 0 1290
ENST00000554444 TUBB3-002 protein_coding Homo_sapiens 0 1171
ENST00000555609 TUBB3-013 nonsense_mediated_decay Homo_sapiens 0 1131
ENST00000555810 TUBB3-004 protein_coding Homo_sapiens 0 617
ENST00000556536 TUBB3-012 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000556922 TUBB3-001 protein_coding Homo_sapiens 0 1171
ENST00000591208 TUBB6-005 protein_coding Homo_sapiens 0 896
ENST00000594075 TUBB4A-009 protein_coding Homo_sapiens 0 348
ENST00000594276 TUBB4A-010 protein_coding Homo_sapiens 0 353
ENST00000600216 TUBB4A-015 protein_coding Homo_sapiens 0 379
ENST00000604929 TUBB4B-002 retained_intron Homo_sapiens 0 1044

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