C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000001656 Hoxc11 10090 + 15:102954427-102957708 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000001701 Hoxc11-001 102954427-102957708 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyMuscleOvaryPlacentaTestisENSMUST00000001701
Transcript ID Adipose Bladder Breast Colon Kidney Muscle Ovary Placenta Testis
ENSMUST00000001701 0.497±0.31 1.309±0.02 0.117±0.05 0.030±0.01 0.120±0.04 2.842±0.46 0.049±0.03 0.090±0.06 0.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_0002TO CIL_0002TO_0003 CGP 15:102936757-102957708
CIL_00003G CIL_00003G_0002 CGP 15:102954427-102971893

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IGI skeletal system development
GO:0001656 IGI metanephros development
GO:0001759 IGI organ induction
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0042733 IGI embryonic digit morphogenesis
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060272 IGI embryonic skeletal joint morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070351 hoxc11a homeo box C11a protein_coding Danio_rerio
ENSDARG00000079406 hoxc11b homeo box C11b protein_coding Danio_rerio
ENSG00000123388 HOXC11 homeobox C11 protein_coding Homo_sapiens

Loading