C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001701 Hoxc11-001 ENSMUSG00000001656 10090 + 15:102954427-102957708 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonKidneyMuscleOvaryPlacentaTestisENSMUST00000001701
Transcript ID Adipose Bladder Breast Colon Kidney Muscle Ovary Placenta Testis
ENSMUST00000001701 0.497±0.31 1.309±0.02 0.117±0.05 0.030±0.01 0.120±0.04 2.842±0.46 0.049±0.03 0.090±0.06 0.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_0002TO CIL_0002TO_0003 CGP 15:102936757-102957708
CIL_00003G CIL_00003G_0002 CGP 15:102954427-102971893

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001501 IGI skeletal system development
GO:0001656 IGI metanephros development
GO:0001759 IGI organ induction
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0042733 IGI embryonic digit morphogenesis
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060272 IGI embryonic skeletal joint morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243082 HOXC11-002 protein_coding Homo_sapiens 0 2084
ENST00000546378 HOXC11-001 protein_coding Homo_sapiens 0 2102

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