C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stem-loop binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057551 Slbp-001 ENSMUSG00000004642 10090 - 5:33640055-33652574 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057551
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057551 2.132±0.85 1.972±0.78 11.232±1.62 16.101±8.85 3.645±0.65 2.210±0.00 2.301±0.70 2.872±1.23 59.298±50.51 2.778±0.54 2.456±0.33 8.440±7.28 26.419±10.76 16.078±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LX CIL_0006LX_0002 CGP 5:33600351-33652574
CIL_0006V4 CIL_0006V4_0002 CGP 5:33634952-33657977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA:ISS nucleus
GO:0005737 IDA:ISS cytoplasm
GO:0006398 IDA histone mRNA 3'-end processing
GO:0030529 IDA ribonucleoprotein complex
GO:0033260 ISS nuclear cell cycle DNA replication
GO:0044822 IEA poly(A) RNA binding
GO:0051028 ISS mRNA transport
GO:0071204 IDA histone pre-mRNA 3'end processing complex
GO:0071207 IDA histone pre-mRNA stem-loop binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318386 SLBP-004 protein_coding Homo_sapiens 0 737
ENST00000429429 SLBP-002 protein_coding Homo_sapiens 0 732
ENST00000480936 SLBP-006 protein_coding Homo_sapiens 0 444
ENST00000483348 SLBP-007 protein_coding Homo_sapiens 0 582
ENST00000488267 SLBP-003 protein_coding Homo_sapiens 0 582
ENST00000489418 SLBP-001 protein_coding Homo_sapiens 0 828

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