C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stem-loop binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101354 Slbp-002 ENSMUSG00000004642 10090 - 5:33640055-33652306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000101354
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000101354 2.896±1.08 4.185±0.97 0.827±0.00 4.767±1.22 1.745±0.74 2.665±1.42 1.734±0.51 4.030±1.24 0.387±0.00 7.505±3.52 20.576±7.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LX CIL_0006LX_0002 CGP 5:33600351-33652574
CIL_0006V4 CIL_0006V4_0002 CGP 5:33634952-33657977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318386 SLBP-004 protein_coding Homo_sapiens 0 529
ENST00000429429 SLBP-002 protein_coding Homo_sapiens 0 529
ENST00000480936 SLBP-006 protein_coding Homo_sapiens 0 228
ENST00000483348 SLBP-007 protein_coding Homo_sapiens 0 529
ENST00000488267 SLBP-003 protein_coding Homo_sapiens 0 529
ENST00000489418 SLBP-001 protein_coding Homo_sapiens 0 529

Loading