C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: stem-loop binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075670 Slbp-003 ENSMUSG00000004642 10090 - 5:33634952-33652345 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverOvaryTestisENSMUST00000075670
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Ovary Testis
ENSMUST00000075670 1.769±0.00 2.993±0.74 2.362±0.14 4.440±1.00 2.000±0.63 2.447±0.36 5.579±0.09 30.701±7.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LX CIL_0006LX_0002 CGP 5:33600351-33652574
CIL_0006V4 CIL_0006V4_0002 CGP 5:33634952-33657977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003729 IDA mRNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0030529 IDA ribonucleoprotein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318386 SLBP-004 protein_coding Homo_sapiens 0 582
ENST00000429429 SLBP-002 protein_coding Homo_sapiens 0 579
ENST00000480936 SLBP-006 protein_coding Homo_sapiens 0 444
ENST00000483348 SLBP-007 protein_coding Homo_sapiens 0 429
ENST00000488267 SLBP-003 protein_coding Homo_sapiens 0 429
ENST00000489418 SLBP-001 protein_coding Homo_sapiens 0 675

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