C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticulocalbin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000005973 Rcn1 10090 - 2:105386291-105399319 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000006128 Rcn1-001 105386291-105399319 protein_coding
  ENSMUST00000127019 Rcn1-002 105386929-105395348 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006128ENSMUST00000127019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006128 17.098±10.71 46.564±34.31 35.480±6.74 13.545±2.63 12.994±9.29 3.566±2.90 3.988±0.40 2.944±0.77 4.563±3.58 21.950±5.98 1.881±0.22 28.701±25.78 14.691±8.21 2.125±0.79
ENSMUST00000127019 N/A N/A 5.441±0.00 3.900±0.00 1.505±0.00 N/A 1.626±0.44 0.839±0.07 1.475±0.37 N/A 0.604±0.22 23.035±6.51 8.949±1.61 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NI CIL_0008NI_0002 VISTA 2:105033715-105635145
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_00017T CIL_00017T_0002 CGP 2:105386291-105697364

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0043010 IMP camera-type eye development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070006 rcn1 reticulocalbin 1, EF-hand calcium binding domain protein_coding Danio_rerio
ENSG00000049449 RCN1 reticulocalbin 1, EF-hand calcium binding domain protein_coding Homo_sapiens

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