C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulocalbin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127019 Rcn1-002 ENSMUSG00000005973 10090 - 2:105386929-105395348 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000127019
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000127019 5.441±0.00 3.900±0.00 1.505±0.00 1.626±0.44 0.839±0.07 1.475±0.37 0.604±0.22 23.035±6.51 8.949±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NI CIL_0008NI_0002 VISTA 2:105033715-105635145
CIL_00096J CIL_00096J_0002 VISTA 2:105147292-105748402
CIL_0007PY CIL_0007PY_0002 VISTA 2:105215855-105816711
CIL_0007JA CIL_0007JA_0005 UCNEbase 2:105301487-106575818
CIL_000914 CIL_000914_0002 VISTA 2:105311041-105914025
CIL_00017T CIL_00017T_0002 CGP 2:105386291-105697364

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000054950 RCN1-002 protein_coding Homo_sapiens 0 955
ENST00000398357 RCN1P2-001 processed_pseudogene Homo_sapiens 0 867
ENST00000400413 RCN1P1-001 processed_pseudogene Homo_sapiens 0 658
ENST00000527337 RCN1-007 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000530348 RCN1-013 protein_coding Homo_sapiens 0 510
ENST00000531345 RCN1-004 retained_intron Homo_sapiens 0 431
ENST00000532474 RCN1-006 processed_transcript Homo_sapiens 0 377
ENST00000532721 RCN1-005 protein_coding Homo_sapiens 0 344
ENST00000532942 RCN1-001 protein_coding Homo_sapiens 0 944
ENST00000533898 RCN1-003 retained_intron Homo_sapiens 0 968

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