C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN domain containing 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128331 Rundc3a-006 ENSMUSG00000006575 10090 + 11:102398119-102399779 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryENSMUST00000128331
Transcript ID Brain Muscle Ovary
ENSMUST00000128331 121.659±0.00 0.146±0.00 0.637±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005JA CIL_0005JA_0002 CGP 11:102348824-102402555
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123712 rundc3ab-002 protein_coding Danio_rerio 3.00004e-41 172
ENSDART00000137081 rundc3ab-001 protein_coding Danio_rerio 3.00004e-41 172
ENST00000225441 RUNDC3A-002 protein_coding Homo_sapiens 0 388
ENST00000426726 RUNDC3A-001 protein_coding Homo_sapiens 0 388
ENST00000587483 RUNDC3A-004 retained_intron Homo_sapiens 0 267
ENST00000590834 RUNDC3A-003 retained_intron Homo_sapiens 0 388
ENST00000590941 RUNDC3A-005 protein_coding Homo_sapiens 0 388
ENST00000612735 RUNDC3A-201 protein_coding Homo_sapiens 0 388

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