C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RUN domain containing 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006750 Rundc3a-001 ENSMUSG00000006575 10090 + 11:102393403-102402555 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006750
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006750 0.282±0.09 6.666±2.47 0.777±0.10 61.799±5.82 0.537±0.18 2.319±0.81 0.065±0.00 1.668±0.63 0.694±0.40 0.513±0.06 0.111±0.04 1.139±0.79 0.286±0.12 2.910±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0005JA CIL_0005JA_0002 CGP 11:102348824-102402555
CIL_0005J9 CIL_0005J9_0002 CGP 11:102393403-102407946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0030250 IEA guanylate cyclase activator activity
GO:0030828 IEA positive regulation of cGMP biosynthetic process
GO:0031284 IEA positive regulation of guanylate cyclase activity
GO:0051428 IEA peptide hormone receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123712 rundc3ab-002 protein_coding Danio_rerio 0 342
ENSDART00000137081 rundc3ab-001 protein_coding Danio_rerio 0 342
ENST00000225441 RUNDC3A-002 protein_coding Homo_sapiens 0 1801
ENST00000426726 RUNDC3A-001 protein_coding Homo_sapiens 0 2137
ENST00000587483 RUNDC3A-004 retained_intron Homo_sapiens 0 1249
ENST00000588564 RUNDC3A-007 retained_intron Homo_sapiens 0 449
ENST00000590834 RUNDC3A-003 retained_intron Homo_sapiens 0 1692
ENST00000590941 RUNDC3A-005 protein_coding Homo_sapiens 0 1731
ENST00000593079 RUNDC3A-006 retained_intron Homo_sapiens 0 641
ENST00000612735 RUNDC3A-201 protein_coding Homo_sapiens 0 1589

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