C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001AV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000029993-ENSG00000102195 CGP 9606 X:150980509-151181465
GeneTranscriptPositionBiotype
ENSG00000029993 (HMGB3)
high mobility group box 3
ENST00000325307 (HMGB3-001) 150983286-150990775 protein_coding
ENST00000419110 (HMGB3-002) 150980509-150987877 protein_coding
ENST00000430118 (HMGB3-004) 150985531-150987297 protein_coding
ENST00000448905 (HMGB3-201) 150983406-150987932 protein_coding
ENST00000455596 (HMGB3-003) 150983385-150987892 protein_coding
ENSG00000230508 (RPL19P21)
ribosomal protein L19 pseudogene 21
ENST00000424919 (RPL19P21-001) 150993501-150994091 processed_pseudogene
ENSG00000234696 (GPR50-AS1)
GPR50 antisense RNA 1
ENST00000454196 (GPR50-AS1-001) 151175192-151177836 antisense
CIL_0001AV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015217-ENSMUSG00000056380 CGP 10090 X:71555918-71669257
GeneTranscriptPositionBiotype
ENSMUSG00000015217 (Hmgb3)
high mobility group box 3
ENSMUST00000015361 (Hmgb3-002) 71555941-71560676 protein_coding
ENSMUST00000072699 (Hmgb3-001) 71555918-71560676 protein_coding
ENSMUST00000088874 (Hmgb3-004) 71555990-71560676 protein_coding
ENSMUST00000114582 (Hmgb3-003) 71555928-71560676 protein_coding
ENSMUST00000123100 (Hmgb3-005) 71556946-71559273 protein_coding
ENSMUST00000132145 (Hmgb3-006) 71557783-71559773 retained_intron
ENSMUSG00000056380 (Gpr50)
G-protein-coupled receptor 50
ENSMUST00000070449 (Gpr50-001) 71663667-71669257 protein_coding
ENSMUST00000131554 (Gpr50-003) 71663966-71667392 processed_transcript
ENSMUST00000144712 (Gpr50-002) 71663966-71667392 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001AV_0001ENSG00000029993ENST00000325307ENST00000419110ENST00000430118ENST00000448905ENST00000455596ENSG00000230508ENST00000424919ENSG00000234696ENST00000454196CIL_0001AV_0002ENSMUSG00000015217ENSMUST00000015361ENSMUST00000072699ENSMUST00000088874ENSMUST00000114582ENSMUST00000123100ENSMUST00000132145ENSMUSG00000056380ENSMUST00000070449ENSMUST00000131554ENSMUST00000144712
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001AV_0001ENSG00000029993ENST00000325307ENST00000419110ENST00000430118ENST00000448905ENST00000455596ENSG00000230508ENST00000424919ENSG00000234696ENST00000454196CIL_0001AV_0002ENSMUSG00000015217ENSMUST00000015361ENSMUST00000072699ENSMUST00000088874ENSMUST00000114582ENSMUST00000123100ENSMUST00000132145ENSMUSG00000056380ENSMUST00000070449ENSMUST00000131554ENSMUST00000144712
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000029993 ENST00000325307 1.815±0.00 1.773±0.00 N/A 3.373±1.82 1.079±0.73 1.317±0.22 0.577±0.00 1.841±0.60 3.411±2.94 0.922±0.56 2.158±2.06 1.903±1.06 30.917±11.80 4.492±1.12
ENST00000419110 N/A N/A N/A 3.283±0.00 0.893±0.00 3.452±0.00 N/A 3.299±0.00 0.761±0.00 1.043±0.00 N/A N/A N/A 6.916±0.00
ENST00000430118 N/A N/A N/A N/A 4.327±0.00 N/A N/A N/A N/A N/A N/A 6.052±4.17 52.974±0.00 18.497±0.00
ENST00000448905 3.597±0.00 3.026±0.00 N/A 5.754±0.00 N/A N/A 1.153±0.00 N/A 10.267±0.00 2.096±0.00 N/A N/A N/A 8.005±0.00
ENST00000455596 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.245±0.00 3.805±0.00 5.237±0.88 97.916±34.82 14.348±0.00
ENSG00000230508 ENST00000424919 0.151±0.00 0.133±0.00 N/A 0.106±0.00 0.071±0.00 0.193±0.00 0.179±0.00 0.104±0.00 0.183±0.00 0.277±0.00 0.550±0.00 0.041±0.00 N/A 0.089±0.00
ENSG00000234696 ENST00000454196 N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A 0.095±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015217 ENSMUST00000015361 N/A N/A N/A N/A 1.158±0.00 N/A N/A N/A N/A N/A 0.784±0.22 8.952±4.90 0.524±0.00 N/A
ENSMUST00000072699 N/A N/A 1.948±0.36 17.326±11.72 0.190±0.00 N/A 1.590±0.02 1.012±0.00 53.155±27.09 N/A 0.415±0.09 6.619±0.90 5.454±7.45 2.737±0.70
ENSMUST00000088874 1.230±0.38 N/A 1.339±0.00 15.373±0.00 1.238±0.51 3.184±1.33 N/A 1.754±0.51 0.604±0.16 1.357±0.21 N/A 7.269±1.80 0.304±0.00 1.519±0.21
ENSMUST00000114582 4.786±2.55 125.384±54.27 4.401±0.61 40.594±28.13 4.110±2.25 9.565±2.02 9.060±2.85 8.049±1.69 15.950±16.83 6.471±1.18 1.038±0.36 23.324±14.61 5.316±5.63 5.849±2.85
ENSMUST00000123100 N/A N/A N/A 4.340±0.00 0.684±0.00 N/A N/A N/A N/A N/A 0.667±0.00 N/A N/A N/A
ENSMUST00000132145 N/A N/A N/A 1.620±0.00 0.396±0.00 N/A N/A N/A N/A N/A 0.793±0.22 8.960±2.84 1.450±0.67 2.513±0.00
ENSMUSG00000056380 ENSMUST00000070449 0.012±0.00 0.018±0.00 0.011±0.01 0.687±0.46 0.010±0.00 N/A N/A 0.012±0.01 0.029±0.03 0.020±0.01 0.017±0.00 0.050±0.02 8.374±5.95 0.123±0.09
ENSMUST00000131554 N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144712 N/A N/A 0.020±0.00 N/A 0.023±0.00 N/A N/A N/A N/A N/A N/A 0.232±0.19 N/A 0.470±0.10

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