C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rhomboid family 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020282 Rhbdf1 10090 - 11:32209585-32222300 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020524 Rhbdf1-006 32209585-32222300 protein_coding
  ENSMUST00000132578 Rhbdf1-002 32214286-32222280 nonsense_mediated_decay
  ENSMUST00000137125 Rhbdf1-004 32210399-32211270 retained_intron
  ENSMUST00000142274 Rhbdf1-005 32209950-32210900 retained_intron
  ENSMUST00000143036 Rhbdf1-007 32209586-32217317 retained_intron
  ENSMUST00000143988 Rhbdf1-009 32209804-32211139 protein_coding
  ENSMUST00000144902 Rhbdf1-003 32216009-32222259 protein_coding
  ENSMUST00000146179 Rhbdf1-008 32209587-32222280 nonsense_mediated_decay
  ENSMUST00000150381 Rhbdf1-001 32215068-32222244 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020524ENSMUST00000132578ENSMUST00000143036ENSMUST00000143988ENSMUST00000146179
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020524 34.785±8.07 21.634±1.47 27.815±4.00 10.267±1.15 35.177±3.72 23.540±1.87 10.892±2.52 17.893±1.98 3.029±0.77 36.909±3.42 4.527±1.37 34.216±9.72 11.085±5.49 1.222±0.14
ENSMUST00000132578 N/A 26.868±5.24 N/A N/A N/A 15.950±0.54 N/A N/A N/A N/A N/A 36.235±4.10 N/A N/A
ENSMUST00000143036 5.051±0.00 4.809±1.15 5.277±0.24 0.936±0.72 6.826±1.09 4.083±0.58 1.314±0.22 2.398±0.55 0.430±0.10 6.653±0.34 0.790±0.09 7.460±2.77 1.247±0.58 0.190±0.01
ENSMUST00000143988 N/A N/A N/A N/A N/A 43.423±0.00 N/A N/A N/A N/A 5.356±0.00 N/A N/A N/A
ENSMUST00000146179 N/A N/A 4.295±0.00 1.497±0.00 2.701±0.00 N/A 2.567±0.57 4.209±0.59 N/A N/A 1.558±0.16 6.284±0.42 3.772±0.00 0.370±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0002 VISTA 11:31945270-32546411
CIL_0008HK CIL_0008HK_0002 VISTA 11:31950452-32552344
CIL_00015Q CIL_00015Q_0002 CGP 11:32205415-32222300

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0004252 IEA serine-type endopeptidase activity
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006508 IEA proteolysis
GO:0008283 ISS cell proliferation
GO:0016021 IEA integral component of membrane
GO:0016477 ISS cell migration
GO:0042058 ISS regulation of epidermal growth factor receptor signaling pathway
GO:0050708 IEA regulation of protein secretion
GO:0050709 ISS negative regulation of protein secretion
GO:0061136 ISS regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017367 rhomboid 5 homolog 1 (Drosophila) protein_coding Danio_rerio
ENSDARG00000036541 rhbdf1 rhomboid 5 homolog 1 (Drosophila) protein_coding Danio_rerio
ENSG00000007384 RHBDF1 rhomboid 5 homolog 1 (Drosophila) protein_coding Homo_sapiens

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