C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: rhomboid 5 homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000007384 RHBDF1 9606 - 16:58059-76355 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262316 RHBDF1-001 58059-72631 protein_coding
  ENST00000417043 RHBDF1-005 62973-65037 nonsense_mediated_decay
  ENST00000419764 RHBDF1-012 63743-65039 protein_coding
  ENST00000428730 RHBDF1-013 58062-65039 nonsense_mediated_decay
  ENST00000448893 RHBDF1-008 58137-59762 protein_coding
  ENST00000450643 RHBDF1-010 63157-76355 protein_coding
  ENST00000472390 RHBDF1-011 64552-76341 retained_intron
  ENST00000482904 RHBDF1-009 61425-62206 retained_intron
  ENST00000486045 RHBDF1-007 58974-60193 retained_intron
  ENST00000487201 RHBDF1-003 63037-72621 retained_intron
  ENST00000493647 RHBDF1-006 59233-60680 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262316ENST00000428730ENST00000448893ENST00000450643ENST00000482904ENST00000493647
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262316 8.188±0.00 7.414±0.00 0.187±0.00 1.520±0.00 7.065±0.00 1.383±0.00 1.251±1.13 4.220±0.00 0.269±0.00 8.702±0.00 1.942±0.00 10.672±8.42 13.642±6.22 3.764±0.00
ENST00000428730 N/A N/A N/A 0.582±0.06 2.312±0.00 1.774±1.58 1.472±0.00 1.945±0.00 0.701±0.00 8.400±0.00 1.806±0.11 9.784±3.89 7.383±2.19 2.631±0.00
ENST00000448893 N/A N/A 1.900±0.00 1.292±0.00 5.072±0.00 0.815±0.00 1.809±0.52 0.955±0.00 1.128±0.60 11.667±0.00 N/A 9.546±5.06 20.881±0.00 2.076±0.00
ENST00000450643 N/A N/A N/A N/A N/A N/A 0.495±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000482904 N/A N/A 1.584±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493647 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.127±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094P CIL_00094P_0001 VISTA 16:-195470-405616
CIL_0008HK CIL_0008HK_0001 VISTA 16:-187027-414801
CIL_00015Q CIL_00015Q_0001 CGP 16:53010-76355
CIL_0007A5 CIL_0007A5_0002 CGP 16:58059-85853

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IDA Golgi membrane
GO:0004252 IEA serine-type endopeptidase activity
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006508 IEA proteolysis
GO:0008283 IMP cell proliferation
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016477 IMP cell migration
GO:0019838 IEA growth factor binding
GO:0042058 IMP regulation of epidermal growth factor receptor signaling pathway
GO:0050708 IMP regulation of protein secretion
GO:0050709 IDA negative regulation of protein secretion
GO:0061136 IDA regulation of proteasomal protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017367 rhomboid 5 homolog 1 (Drosophila) protein_coding Danio_rerio
ENSDARG00000036541 rhbdf1 rhomboid 5 homolog 1 (Drosophila) protein_coding Danio_rerio
ENSMUSG00000020282 Rhbdf1 rhomboid family 1 (Drosophila) protein_coding Mus_musculus

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