C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 85
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021085 Nup85-001 ENSMUSG00000020739 10090 + 11:115564434-115583985 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021085 9.768±1.81 6.887±2.45 21.037±0.55 21.868±1.42 10.344±3.67 7.314±2.28 6.292±1.56 7.438±2.12 24.548±21.91 9.301±2.83 7.799±1.13 16.873±6.52 20.766±17.21 11.045±2.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IA CIL_0007IA_0002 CGP 11:115523102-115583985
CIL_0007IW CIL_0007IW_0002 CGP 11:115564434-115604051

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0005515 IEA protein binding
GO:0005737 ISA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 ISA plasma membrane
GO:0006935 IDA chemotaxis
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019221 ISA cytokine-mediated signaling pathway
GO:0030032 IDA lamellipodium assembly
GO:0031080 ISS nuclear pore outer ring
GO:0031727 ISA CCR2 chemokine receptor binding
GO:0048246 IDA macrophage chemotaxis
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245544 NUP85-001 protein_coding Homo_sapiens 0 2202
ENST00000449421 NUP85-003 processed_transcript Homo_sapiens 0 1040
ENST00000577208 NUP85-010 processed_transcript Homo_sapiens 0 564
ENST00000577561 NUP85-013 retained_intron Homo_sapiens 0 357
ENST00000577645 NUP85-014 retained_intron Homo_sapiens 0 664
ENST00000578830 NUP85-012 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000579298 NUP85-004 protein_coding Homo_sapiens 0 1352
ENST00000579324 NUP85-002 protein_coding Homo_sapiens 0 2061
ENST00000579557 NUP85-025 protein_coding Homo_sapiens 0 479
ENST00000581104 NUP85-005 nonsense_mediated_decay Homo_sapiens 0 1275
ENST00000582681 NUP85-019 retained_intron Homo_sapiens 0 475
ENST00000583070 NUP85-016 protein_coding Homo_sapiens 0 989
ENST00000583548 NUP85-009 processed_transcript Homo_sapiens 0 512
ENST00000583569 NUP85-008 protein_coding Homo_sapiens 0 453
ENST00000583877 NUP85-011 protein_coding Homo_sapiens 0 494
ENST00000583948 NUP85-015 processed_transcript Homo_sapiens 0 1050

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