C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 85
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140986 Nup85-002 ENSMUSG00000020739 10090 + 11:115577984-115582039 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastOvaryENSMUST00000140986
Transcript ID Adrenal Breast Ovary
ENSMUST00000140986 6.746±0.00 21.497±0.00 9.940±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IA CIL_0007IA_0002 CGP 11:115523102-115583985
CIL_0007IW CIL_0007IW_0002 CGP 11:115564434-115604051

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 ISA cytoplasm
GO:0005886 ISA plasma membrane
GO:0006935 IDA chemotaxis
GO:0019221 ISA cytokine-mediated signaling pathway
GO:0030032 IDA lamellipodium assembly
GO:0031727 ISA CCR2 chemokine receptor binding
GO:0048246 IDA macrophage chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245544 NUP85-001 protein_coding Homo_sapiens 0 894
ENST00000449421 NUP85-003 processed_transcript Homo_sapiens 0.0000000000001 82
ENST00000577561 NUP85-013 retained_intron Homo_sapiens 0.00000000000004 82
ENST00000577645 NUP85-014 retained_intron Homo_sapiens 0 662
ENST00000578830 NUP85-012 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000579298 NUP85-004 protein_coding Homo_sapiens 0 894
ENST00000579324 NUP85-002 protein_coding Homo_sapiens 0 894
ENST00000579557 NUP85-025 protein_coding Homo_sapiens 0.00000000000007 82
ENST00000581104 NUP85-005 nonsense_mediated_decay Homo_sapiens 0 894
ENST00000582681 NUP85-019 retained_intron Homo_sapiens 0 475
ENST00000583070 NUP85-016 protein_coding Homo_sapiens 0 765
ENST00000583877 NUP85-011 protein_coding Homo_sapiens 0.00000000000005 82
ENST00000583948 NUP85-015 processed_transcript Homo_sapiens 0.0000000000001 82

Loading