C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153230 Pdlim7-006 ENSMUSG00000021493 10090 - 13:55497490-55513434 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000153230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000153230 17.764±9.88 3.618±0.63 26.795±1.32 3.368±1.45 9.875±2.81 14.941±2.16 4.136±0.02 2.230±0.31 1.246±0.72 8.218±0.49 19.986±9.60 6.667±3.42 0.985±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0002YE CIL_0002YE_0002 CGP 13:55473429-55513676
CIL_0002YF CIL_0002YF_0002 CGP 13:55495795-55528538

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355572 PDLIM7-004 protein_coding Homo_sapiens 0 688
ENST00000355841 PDLIM7-001 protein_coding Homo_sapiens 0 1011
ENST00000359895 PDLIM7-003 protein_coding Homo_sapiens 0 1011
ENST00000393546 PDLIM7-012 protein_coding Homo_sapiens 0 370
ENST00000393551 PDLIM7-007 protein_coding Homo_sapiens 0 684
ENST00000463411 PDLIM7-008 retained_intron Homo_sapiens 0 364
ENST00000486828 PDLIM7-006 nonsense_mediated_decay Homo_sapiens 0 1109
ENST00000493815 PDLIM7-002 nonsense_mediated_decay Homo_sapiens 0 1011
ENST00000504380 PDLIM7-017 retained_intron Homo_sapiens 0 327
ENST00000505074 PDLIM7-015 protein_coding Homo_sapiens 0 688
ENST00000505746 PDLIM7-016 processed_transcript Homo_sapiens 0 270
ENST00000506161 PDLIM7-009 protein_coding Homo_sapiens 0 614
ENST00000506537 PDLIM7-010 protein_coding Homo_sapiens 0 337

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