C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ and LIM domain 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046246 Pdlim7-001 ENSMUSG00000021493 10090 - 13:55498416-55513446 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000046246
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000046246 34.361±14.89 7.963±1.41 90.829±0.87 5.032±0.19 16.398±4.18 46.679±5.84 5.427±0.18 5.295±0.75 4.792±3.38 15.117±1.33 38.855±17.43 35.716±15.72 1.443±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0002 VISTA 13:55104361-55707564
CIL_0002YE CIL_0002YE_0002 CGP 13:55473429-55513676
CIL_0002YF CIL_0002YF_0002 CGP 13:55495795-55528538

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0001725 IDA stress fiber
GO:0001726 IDA ruffle
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005925 IEA focal adhesion
GO:0007275 IEA multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0015629 IEA actin cytoskeleton
GO:0030036 IPI actin cytoskeleton organization
GO:0030154 IEA cell differentiation
GO:0045669 IEA positive regulation of osteoblast differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355572 PDLIM7-004 protein_coding Homo_sapiens 0 680
ENST00000355841 PDLIM7-001 protein_coding Homo_sapiens 0 1688
ENST00000359895 PDLIM7-003 protein_coding Homo_sapiens 0 1223
ENST00000393546 PDLIM7-012 protein_coding Homo_sapiens 0 370
ENST00000393551 PDLIM7-007 protein_coding Homo_sapiens 0 682
ENST00000463411 PDLIM7-008 retained_intron Homo_sapiens 0 368
ENST00000486828 PDLIM7-006 nonsense_mediated_decay Homo_sapiens 0 1011
ENST00000493815 PDLIM7-002 nonsense_mediated_decay Homo_sapiens 0 1607
ENST00000504380 PDLIM7-017 retained_intron Homo_sapiens 0 327
ENST00000505074 PDLIM7-015 protein_coding Homo_sapiens 0 688
ENST00000505746 PDLIM7-016 processed_transcript Homo_sapiens 0 270
ENST00000506161 PDLIM7-009 protein_coding Homo_sapiens 0 614
ENST00000506537 PDLIM7-010 protein_coding Homo_sapiens 0 337

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