C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein 26
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022119 Rbm26 10090 - 14:105106751-105177327 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000022715 Rbm26-007 105115063-105177327 protein_coding
  ENSMUST00000100327 Rbm26-001 105114986-105177323 protein_coding
  ENSMUST00000163499 Rbm26-002 105116135-105177264 protein_coding
  ENSMUST00000163545 Rbm26-006 105114965-105176860 protein_coding
  ENSMUST00000172122 Rbm26-004 105106751-105130337 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022715ENSMUST00000100327ENSMUST00000163499ENSMUST00000163545ENSMUST00000172122
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022715 3.586±2.52 3.357±1.16 N/A 5.637±0.65 2.496±1.09 2.545±0.66 1.516±0.16 1.242±0.09 1.694±0.37 3.689±1.46 1.050±0.12 8.033±3.80 10.229±0.00 14.102±8.61
ENSMUST00000100327 1.805±1.15 8.333±2.71 N/A N/A 4.887±2.18 4.043±1.93 0.711±0.00 1.632±0.32 1.257±0.67 1.714±0.46 N/A 10.183±1.89 4.819±1.32 2.839±0.21
ENSMUST00000163499 0.776±0.00 N/A N/A N/A N/A N/A N/A 0.781±0.00 N/A 1.003±0.02 N/A N/A 1.761±0.41 N/A
ENSMUST00000163545 N/A 2.862±0.07 N/A 2.245±0.00 2.102±0.43 1.529±0.00 1.177±0.00 N/A N/A 2.004±0.00 N/A 3.709±1.24 3.331±0.00 N/A
ENSMUST00000172122 N/A N/A 4.374±0.87 7.718±4.49 N/A N/A N/A N/A 4.856±1.69 2.836±0.15 1.349±0.28 2.591±0.00 4.281±2.75 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EJ CIL_0002EJ_0002 CGP 14:104477534-105177327
CIL_00088S CIL_00088S_0002 VISTA 14:104534243-105135529
CIL_00083L CIL_00083L_0002 VISTA 14:105076563-105679035
CIL_0002EH CIL_0002EH_0002 CGP 14:105106751-105309298

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006397 IEA mRNA processing
GO:0010923 ISS negative regulation of phosphatase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018889 RBM26 RNA binding motif protein 26 protein_coding Danio_rerio
ENSG00000139746 RBM26 RNA binding motif protein 26 protein_coding Homo_sapiens

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