C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163545 Rbm26-006 ENSMUSG00000022119 10090 - 14:105114965-105176860 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungOvaryPlacentaENSMUST00000163545
Transcript ID Adrenal Brain Breast Colon Heart Lung Ovary Placenta
ENSMUST00000163545 2.862±0.07 2.245±0.00 2.102±0.43 1.529±0.00 1.177±0.00 2.004±0.00 3.709±1.24 3.331±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EJ CIL_0002EJ_0002 CGP 14:104477534-105177327
CIL_00088S CIL_00088S_0002 VISTA 14:104534243-105135529
CIL_00083L CIL_00083L_0002 VISTA 14:105076563-105679035
CIL_0002EH CIL_0002EH_0002 CGP 14:105106751-105309298

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006397 IEA mRNA processing
GO:0010923 ISS negative regulation of phosphatase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114086 RBM26-202 protein_coding Danio_rerio 2e-35 156
ENSDART00000066084 RBM26-201 protein_coding Danio_rerio 2e-29 135
ENST00000267229 RBM26-002 protein_coding Homo_sapiens 0 2687
ENST00000438724 RBM26-201 protein_coding Homo_sapiens 0 2647
ENST00000438737 RBM26-004 protein_coding Homo_sapiens 0 4458
ENST00000449987 RBM26-006 protein_coding Homo_sapiens 0 604
ENST00000461008 RBM26-003 processed_transcript Homo_sapiens 0 294
ENST00000472143 RBM26-005 retained_intron Homo_sapiens 0 497
ENST00000622611 RBM26-202 protein_coding Homo_sapiens 0 4591

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