C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022715 Rbm26-007 ENSMUSG00000022119 10090 - 14:105115063-105177327 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022715
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022715 3.586±2.52 3.357±1.16 5.637±0.65 2.496±1.09 2.545±0.66 1.516±0.16 1.242±0.09 1.694±0.37 3.689±1.46 1.050±0.12 8.033±3.80 10.229±0.00 14.102±8.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EJ CIL_0002EJ_0002 CGP 14:104477534-105177327
CIL_00088S CIL_00088S_0002 VISTA 14:104534243-105135529
CIL_00083L CIL_00083L_0002 VISTA 14:105076563-105679035
CIL_0002EH CIL_0002EH_0002 CGP 14:105106751-105309298

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0006397 IEA mRNA processing
GO:0010923 ISS negative regulation of phosphatase activity
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114086 RBM26-202 protein_coding Danio_rerio 8e-39 167
ENSDART00000066084 RBM26-201 protein_coding Danio_rerio 1e-32 147
ENST00000267229 RBM26-002 protein_coding Homo_sapiens 0 2723
ENST00000438724 RBM26-201 protein_coding Homo_sapiens 0 2994
ENST00000438737 RBM26-004 protein_coding Homo_sapiens 0 4654
ENST00000449987 RBM26-006 protein_coding Homo_sapiens 0 604
ENST00000461008 RBM26-003 processed_transcript Homo_sapiens 0 294
ENST00000472143 RBM26-005 retained_intron Homo_sapiens 0 784
ENST00000622611 RBM26-202 protein_coding Homo_sapiens 0 4549

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