C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transformer 2 beta homolog (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022858 Tra2b 10090 - 16:22244549-22266005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023564 Tra2b-006 22246448-22255247 protein_coding
  ENSMUST00000159946 Tra2b-004 22254517-22259622 processed_transcript
  ENSMUST00000160579 Tra2b-002 22258064-22265918 retained_intron
  ENSMUST00000161286 Tra2b-001 22244549-22266005 protein_coding
  ENSMUST00000161774 Tra2b-005 22246899-22252649 retained_intron
  ENSMUST00000162413 Tra2b-003 22246462-22265829 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023564ENSMUST00000160579ENSMUST00000161286ENSMUST00000161774ENSMUST00000162413
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023564 10.236±1.69 7.716±1.14 N/A N/A 11.963±2.16 N/A 4.992±0.66 5.500±2.52 16.367±16.20 5.700±1.18 3.098±0.00 25.264±2.68 23.918±13.24 11.637±3.84
ENSMUST00000160579 N/A N/A N/A N/A N/A N/A N/A N/A 6.000±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161286 12.902±6.15 8.059±5.01 4.530±0.56 6.021±2.27 10.989±6.12 14.489±2.84 3.439±0.93 8.350±0.95 10.337±9.24 11.329±3.14 1.446±0.28 21.091±7.97 10.788±5.86 7.844±2.86
ENSMUST00000161774 N/A N/A N/A 13.147±0.00 N/A N/A N/A N/A N/A N/A N/A 49.315±0.00 41.840±7.97 19.611±0.00
ENSMUST00000162413 N/A N/A N/A 8.253±0.00 N/A N/A N/A N/A N/A N/A N/A 18.164±0.00 15.559±5.94 21.114±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0002 VISTA 16:21809929-22410861
CIL_0003YC CIL_0003YC_0003 CGP 16:22059009-22266005
CIL_0006RI CIL_0006RI_0002 CGP 16:22244549-22439719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0044822 IEA poly(A) RNA binding
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002168 tra2b transformer 2 beta homolog (Drosophila) protein_coding Danio_rerio
ENSG00000136527 TRA2B transformer 2 beta homolog (Drosophila) protein_coding Homo_sapiens

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