C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformer 2 beta homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023564 Tra2b-006 ENSMUSG00000022858 10090 - 16:22246448-22255247 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023564
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023564 10.236±1.69 7.716±1.14 11.963±2.16 4.992±0.66 5.500±2.52 16.367±16.20 5.700±1.18 3.098±0.00 25.264±2.68 23.918±13.24 11.637±3.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZT CIL_0008ZT_0002 VISTA 16:21809929-22410861
CIL_0003YC CIL_0003YC_0003 CGP 16:22059009-22266005
CIL_0006RI CIL_0006RI_0002 CGP 16:22244549-22439719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259043 TRA2B-014 protein_coding Homo_sapiens 0 763
ENST00000382191 TRA2B-008 protein_coding Homo_sapiens 0 935
ENST00000414862 TRA2B-016 protein_coding Homo_sapiens 0 1018
ENST00000453386 TRA2B-001 protein_coding Homo_sapiens 0 1777
ENST00000456380 TRA2B-003 nonsense_mediated_decay Homo_sapiens 0 1749
ENST00000463328 TRA2B-006 retained_intron Homo_sapiens 0 1373
ENST00000465245 TRA2B-010 processed_transcript Homo_sapiens 0 425
ENST00000466832 TRA2B-007 retained_intron Homo_sapiens 0 1066
ENST00000477939 TRA2B-013 retained_intron Homo_sapiens 0 407
ENST00000485530 TRA2B-011 retained_intron Homo_sapiens 0 409
ENST00000487615 TRA2B-004 retained_intron Homo_sapiens 0 1751
ENST00000492417 TRA2B-005 retained_intron Homo_sapiens 0 1910
ENST00000493864 TRA2B-015 retained_intron Homo_sapiens 0 444

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