C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: methyl-CpG binding domain protein 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025409 Mbd6 10090 - 10:127281956-127289018 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026476 Mbd6-001 127281956-127288890 protein_coding
  ENSMUST00000119078 Mbd6-002 127281956-127289018 protein_coding
  ENSMUST00000126243 Mbd6-007 127281956-127285900 nonsense_mediated_decay
  ENSMUST00000136169 Mbd6-005 127281956-127283668 nonsense_mediated_decay
  ENSMUST00000154851 Mbd6-004 127282676-127284358 protein_coding
  ENSMUST00000156208 Mbd6-003 127286568-127288853 protein_coding
  ENSMUST00000172567 Mbd6-008 127283526-127284371 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000026476ENSMUST00000119078ENSMUST00000126243
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000026476 5.207±0.15 7.253±1.20 5.668±0.00 N/A 5.245±1.06 6.474±1.35 3.075±0.75 4.898±0.23 3.063±0.49 6.499±0.68 6.991±1.35 14.335±1.42 15.893±1.15
ENSMUST00000119078 4.301±0.27 11.636±2.15 15.486±0.00 9.068±1.77 6.932±2.36 7.328±2.30 2.387±0.00 4.055±0.00 4.105±1.42 6.486±1.32 7.201±1.38 11.573±5.10 8.882±0.00
ENSMUST00000126243 N/A N/A N/A N/A 3.386±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EM CIL_0007EM_0002 CGP 10:127225696-127281959
CIL_0006M4 CIL_0006M4_0002 CGP 10:127266262-127289018
CIL_0003A8 CIL_0003A8_0002 CGP 10:127281956-127296288

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0008150 ND biological_process
GO:0010369 IEA chromocenter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086980 mbd6 methyl-CpG binding domain protein 6 protein_coding Danio_rerio
ENSG00000166987 MBD6 methyl-CpG binding domain protein 6 protein_coding Homo_sapiens

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