C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026476 Mbd6-001 ENSMUSG00000025409 10090 - 10:127281956-127288890 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000026476
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000026476 5.207±0.15 7.253±1.20 5.668±0.00 5.245±1.06 6.474±1.35 3.075±0.75 4.898±0.23 3.063±0.49 6.499±0.68 6.991±1.35 14.335±1.42 15.893±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EM CIL_0007EM_0002 CGP 10:127225696-127281959
CIL_0006M4 CIL_0006M4_0002 CGP 10:127266262-127289018
CIL_0003A8 CIL_0003A8_0002 CGP 10:127281956-127296288

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0010369 IEA chromocenter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355673 MBD6-001 protein_coding Homo_sapiens 0 5648
ENST00000546632 MBD6-009 protein_coding Homo_sapiens 0 396
ENST00000546805 MBD6-008 protein_coding Homo_sapiens 0 422
ENST00000547545 MBD6-004 nonsense_mediated_decay Homo_sapiens 0 2292
ENST00000547844 MBD6-016 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000548249 DCTN2-001 protein_coding Homo_sapiens 0.000000000000004 88
ENST00000548550 MBD6-014 retained_intron Homo_sapiens 0 340
ENST00000548887 MBD6-005 protein_coding Homo_sapiens 0 795
ENST00000549042 MBD6-012 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000549231 MBD6-007 processed_transcript Homo_sapiens 0 241
ENST00000549623 MBD6-010 protein_coding Homo_sapiens 0 623
ENST00000551351 MBD6-006 protein_coding Homo_sapiens 0 315
ENST00000552163 MBD6-015 protein_coding Homo_sapiens 0 837
ENST00000552255 MBD6-011 protein_coding Homo_sapiens 0 278
ENST00000552659 MBD6-013 protein_coding Homo_sapiens 0 544

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