C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126243 Mbd6-007 ENSMUSG00000025409 10090 - 10:127281956-127285900 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENSMUST00000126243
Transcript ID Breast
ENSMUST00000126243 3.386±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EM CIL_0007EM_0002 CGP 10:127225696-127281959
CIL_0006M4 CIL_0006M4_0002 CGP 10:127266262-127289018
CIL_0003A8 CIL_0003A8_0002 CGP 10:127281956-127296288

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355673 MBD6-001 protein_coding Homo_sapiens 0 2562
ENST00000547545 MBD6-004 nonsense_mediated_decay Homo_sapiens 0 1945
ENST00000547844 MBD6-016 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000548249 DCTN2-001 protein_coding Homo_sapiens 0.000000000000004 88
ENST00000548550 MBD6-014 retained_intron Homo_sapiens 0 337
ENST00000552163 MBD6-015 protein_coding Homo_sapiens 0 837
ENST00000552659 MBD6-013 protein_coding Homo_sapiens 0 267

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