C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119078 Mbd6-002 ENSMUSG00000025409 10090 - 10:127281956-127289018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000119078
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000119078 4.301±0.27 11.636±2.15 15.486±0.00 9.068±1.77 6.932±2.36 7.328±2.30 2.387±0.00 4.055±0.00 4.105±1.42 6.486±1.32 7.201±1.38 11.573±5.10 8.882±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EM CIL_0007EM_0002 CGP 10:127225696-127281959
CIL_0006M4 CIL_0006M4_0002 CGP 10:127266262-127289018
CIL_0003A8 CIL_0003A8_0002 CGP 10:127281956-127296288

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 ISS chromatin binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355673 MBD6-001 protein_coding Homo_sapiens 0 5788
ENST00000546632 MBD6-009 protein_coding Homo_sapiens 0 396
ENST00000546805 MBD6-008 protein_coding Homo_sapiens 0 422
ENST00000547545 MBD6-004 nonsense_mediated_decay Homo_sapiens 0 2320
ENST00000547844 MBD6-016 nonsense_mediated_decay Homo_sapiens 0 344
ENST00000548249 DCTN2-001 protein_coding Homo_sapiens 0.000000000000004 88
ENST00000548550 MBD6-014 retained_intron Homo_sapiens 0 316
ENST00000548887 MBD6-005 protein_coding Homo_sapiens 0 795
ENST00000549042 MBD6-012 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000549231 MBD6-007 processed_transcript Homo_sapiens 0 241
ENST00000549623 MBD6-010 protein_coding Homo_sapiens 0 623
ENST00000551351 MBD6-006 protein_coding Homo_sapiens 0 315
ENST00000552163 MBD6-015 protein_coding Homo_sapiens 0 817
ENST00000552255 MBD6-011 protein_coding Homo_sapiens 0 278
ENST00000552659 MBD6-013 protein_coding Homo_sapiens 0 544

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