C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleolin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026234 Ncl 10090 - 1:86344719-86359400 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027438 Ncl-001 86344719-86359400 protein_coding
  ENSMUST00000185676 Ncl-002 86350495-86359364 retained_intron
  ENSMUST00000185785 Ncl-003 86357312-86358969 protein_coding
  ENSMUST00000186050 Ncl-005 86350564-86352063 retained_intron
  ENSMUST00000188682 Ncl-006 86350496-86351211 retained_intron
  ENSMUST00000189504 Ncl-004 86351101-86352306 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027438ENSMUST00000185676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027438 2.395±1.50 3.699±1.00 4.331±0.03 5.690±0.73 0.950±0.53 1.542±0.39 1.714±0.42 2.074±0.46 4.870±5.60 1.776±0.55 4.266±0.95 4.990±4.09 8.266±3.85 0.676±0.01
ENSMUST00000185676 4.360±2.91 29.247±5.06 14.488±0.00 32.394±32.71 8.856±4.06 9.281±1.88 4.760±0.71 7.785±1.01 38.331±46.42 8.271±0.40 19.758±6.74 47.140±78.65 177.314±179.13 26.671±45.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0004KZ CIL_0004KZ_0003 CGP 1:86302832-86359400
CIL_00076N CIL_00076N_0002 CGP 1:86344719-86388162

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001525 IEA angiogenesis
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005938 IEA cell cortex
GO:0008022 IEA protein C-terminus binding
GO:0016020 IEA membrane
GO:0030529 ISS ribonucleoprotein complex
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0042162 ISS telomeric DNA binding
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:1901838 IEA positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002710 ncl nucleolin protein_coding Danio_rerio
ENSG00000115053 NCL nucleolin protein_coding Homo_sapiens

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