C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00076N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115053-ENSG00000171596 CGP 9606 2:231453531-231530495
GeneTranscriptPositionBiotype
ENSG00000115053 (NCL)
nucleolin 		ENST00000322723 (NCL-001) 231453531-231464594 protein_coding
ENST00000356936 (NCL-015) 231455442-231458357 protein_coding
ENST00000417652 (NCL-011) 231461607-231464199 protein_coding
ENST00000436894 (NCL-013) 231461681-231463693 protein_coding
ENST00000453992 (NCL-012) 231461651-231464180 protein_coding
ENST00000454824 (NCL-010) 231461594-231464207 protein_coding
ENST00000461347 (NCL-002) 231454908-231483641 retained_intron
ENST00000466274 (NCL-016) 231456010-231457410 retained_intron
ENST00000484328 (NCL-009) 231462992-231464379 retained_intron
ENST00000494618 (NCL-014) 231457426-231460725 retained_intron
ENSG00000171596 (NMUR1)
neuromedin U receptor 1 		ENST00000305141 (NMUR1-001) 231523160-231530495 protein_coding
ENSG00000181798 (LINC00471)
long intergenic non-protein coding RNA 471 		ENST00000313064 (LINC00471-001) 231508426-231514339 lincRNA
ENSG00000202400 (SNORD82)
small nucleolar RNA, C/D box 82 		ENST00000365530 (SNORD82-201) 231460371-231460440 snoRNA
ENSG00000206885 (SNORA75)
small nucleolar RNA, H/ACA box 75 		ENST00000384158 (SNORA75-201) 231455800-231455936 snoRNA
ENSG00000207280 (SNORD20)
small nucleolar RNA, C/D box 20 		ENST00000384550 (SNORD20-201) 231456444-231456523 snoRNA
ENSG00000223198 (RNU2-22P)
RNA, U2 small nuclear 22, pseudogene 		ENST00000411266 (RNU2-22P-201) 231501990-231502201 snRNA
ENSG00000263774 (AC017104.1)
 ENST00000584251 (AC017104.1-201) 231490204-231490289 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00076N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026234-ENSMUSG00000026237 CGP 10090 1:86344719-86388162
GeneTranscriptPositionBiotype
ENSMUSG00000026234 (Ncl)
nucleolin 		ENSMUST00000027438 (Ncl-001) 86344719-86359400 protein_coding
ENSMUST00000185676 (Ncl-002) 86350495-86359364 retained_intron
ENSMUST00000185785 (Ncl-003) 86357312-86358969 protein_coding
ENSMUST00000186050 (Ncl-005) 86350564-86352063 retained_intron
ENSMUST00000188682 (Ncl-006) 86350496-86351211 retained_intron
ENSMUST00000189504 (Ncl-004) 86351101-86352306 retained_intron
ENSMUSG00000026237 (Nmur1)
neuromedin U receptor 1 		ENSMUST00000027440 (Nmur1-001) 86386242-86388162 protein_coding
ENSMUSG00000073627 (C130036L24Rik)
RIKEN cDNA C130036L24 gene 		ENSMUST00000127284 (C130036L24Rik-002) 86359574-86367964 retained_intron
ENSMUST00000137643 (C130036L24Rik-001) 86359584-86373791 processed_transcript
ENSMUST00000190804 (C130036L24Rik-003) 86359588-86362772 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076N_0001ENSG00000115053ENST00000322723ENST00000356936ENST00000417652ENST00000436894ENST00000453992ENST00000454824ENST00000461347ENST00000466274ENST00000484328ENST00000494618ENSG00000171596ENST00000305141ENSG00000181798ENST00000313064ENSG00000202400ENST00000365530ENSG00000206885ENST00000384158ENSG00000207280ENST00000384550ENSG00000223198ENST00000411266ENSG00000263774ENST00000584251CIL_00076N_0002ENSMUSG00000026234ENSMUST00000027438ENSMUST00000185676ENSMUST00000185785ENSMUST00000186050ENSMUST00000188682ENSMUST00000189504ENSMUSG00000026237ENSMUST00000027440ENSMUSG00000073627ENSMUST00000127284ENSMUST00000137643ENSMUST00000190804
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00076N_0001ENSG00000115053ENST00000322723ENST00000461347ENST00000494618ENSG00000171596ENST00000305141ENSG00000181798ENST00000313064ENSG00000202400ENST00000365530ENSG00000206885ENST00000384158ENSG00000207280ENST00000384550ENSG00000223198ENST00000411266ENSG00000263774ENST00000584251CIL_00076N_0002ENSMUSG00000026234ENSMUST00000027438ENSMUST00000185676ENSMUSG00000026237ENSMUST00000027440ENSMUSG00000073627ENSMUST00000127284ENSMUST00000137643ENSMUST00000190804
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115053 ENST00000322723 12.811±0.00 25.364±0.00 6.608±0.00 8.982±7.74 8.460±4.74 9.727±5.79 2.063±0.00 7.180±4.24 6.895±1.63 6.133±4.35 7.645±5.62 28.267±21.69 38.242±38.47 18.891±1.73
ENST00000356936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461347 N/A N/A N/A N/A N/A N/A 0.590±0.00 N/A N/A N/A N/A N/A 90.269±0.00 N/A
ENST00000466274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494618 N/A N/A 7.704±0.00 3.827±0.00 20.335±0.00 16.847±0.00 2.278±0.00 6.424±0.00 N/A 8.142±0.00 4.996±0.00 12.272±0.00 N/A N/A
ENSG00000171596 ENST00000305141 1.293±0.00 0.818±0.00 0.085±0.00 0.104±0.00 2.185±1.79 0.285±0.07 0.088±0.04 0.182±0.06 0.172±0.01 0.565±0.39 0.074±0.02 0.173±0.14 0.802±0.59 0.729±0.53
ENSG00000181798 ENST00000313064 0.161±0.00 0.387±0.00 0.204±0.00 0.455±0.02 0.326±0.03 0.171±0.12 0.184±0.00 0.279±0.00 0.057±0.00 0.149±0.08 N/A 0.253±0.19 0.122±0.00 1.375±0.00
ENSG00000202400 ENST00000365530 N/A 0.876±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206885 ENST00000384158 0.495±0.00 1.413±0.00 N/A 9.848±0.00 0.746±0.00 0.232±0.00 3.734±0.00 0.125±0.00 21.612±0.00 11.588±10.89 N/A 35.455±34.57 0.315±0.00 1.121±0.00
ENSG00000207280 ENST00000384550 N/A 0.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.071±0.00 1.347±0.00 1.037±0.00
ENSG00000223198 ENST00000411266 0.095±0.00 N/A N/A 0.218±0.00 N/A 0.832±0.00 0.087±0.00 N/A N/A N/A 0.489±0.00 1.427±0.00 N/A 0.598±0.00
ENSG00000263774 ENST00000584251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.825±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026234 ENSMUST00000027438 2.395±1.50 3.699±1.00 4.331±0.03 5.690±0.73 0.950±0.53 1.542±0.39 1.714±0.42 2.074±0.46 4.870±5.60 1.776±0.55 4.266±0.95 4.990±4.09 8.266±3.85 0.676±0.01
ENSMUST00000185676 4.360±2.91 29.247±5.06 14.488±0.00 32.394±32.71 8.856±4.06 9.281±1.88 4.760±0.71 7.785±1.01 38.331±46.42 8.271±0.40 19.758±6.74 47.140±78.65 177.314±179.13 26.671±45.99
ENSMUST00000185785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000026237 ENSMUST00000027440 0.177±0.06 0.081±0.03 0.019±0.00 0.044±0.01 0.135±0.04 1.368±0.31 0.021±0.00 0.071±0.03 0.012±0.01 0.714±0.37 0.029±0.00 0.211±0.17 0.079±0.03 4.724±2.74
ENSMUSG00000073627 ENSMUST00000127284 0.292±0.08 N/A 0.543±0.00 0.850±0.20 1.191±0.45 0.697±0.10 0.189±0.09 0.466±0.12 0.337±0.26 0.882±0.00 0.306±0.10 1.742±0.75 0.291±0.12 0.498±0.08
ENSMUST00000137643 0.127±0.05 N/A 0.412±0.00 0.391±0.02 0.317±0.08 0.156±0.05 0.130±0.06 0.074±0.01 0.271±0.31 0.159±0.00 0.261±0.03 0.283±0.10 0.224±0.04 0.077±0.05
ENSMUST00000190804 0.226±0.17 N/A 0.083±0.00 0.122±0.04 0.149±0.02 0.159±0.06 0.095±0.02 0.054±0.02 0.092±0.04 0.112±0.00 0.078±0.02 0.163±0.08 0.085±0.02 0.076±0.05

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