C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleolin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185676 Ncl-002 ENSMUSG00000026234 10090 - 1:86350495-86359364 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000185676
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000185676 4.360±2.91 29.247±5.06 14.488±0.00 32.394±32.71 8.856±4.06 9.281±1.88 4.760±0.71 7.785±1.01 38.331±46.42 8.271±0.40 19.758±6.74 47.140±78.65 177.314±179.13 26.671±45.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0004KZ CIL_0004KZ_0003 CGP 1:86302832-86359400
CIL_00076N CIL_00076N_0002 CGP 1:86344719-86388162

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322723 NCL-001 protein_coding Homo_sapiens 0 1336
ENST00000356936 NCL-015 protein_coding Homo_sapiens 0 529
ENST00000416078 NCLP2-001 processed_pseudogene Homo_sapiens 5e-27 126
ENST00000417652 NCL-011 protein_coding Homo_sapiens 0 466
ENST00000436894 NCL-013 protein_coding Homo_sapiens 0 453
ENST00000445357 NCLP1-001 processed_pseudogene Homo_sapiens 0 364
ENST00000453992 NCL-012 protein_coding Homo_sapiens 0 466
ENST00000454824 NCL-010 protein_coding Homo_sapiens 0 466
ENST00000461347 NCL-002 retained_intron Homo_sapiens 0 1020
ENST00000466274 NCL-016 retained_intron Homo_sapiens 0 291
ENST00000484328 NCL-009 retained_intron Homo_sapiens 4.99983e-42 174
ENST00000494618 NCL-014 retained_intron Homo_sapiens 0 710
ENST00000527320 RP11-672A2.7-001 processed_pseudogene Homo_sapiens 1e-20 102

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