C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004KZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038489-ENSDARG00000002710 CGP 7955 22:39538921-39572992
GeneTranscriptPositionBiotype
ENSDARG00000002710 (ncl)
nucleolin 		ENSDART00000017188 (ncl-201) 39555946-39572942 protein_coding
ENSDART00000124698 (ncl-001) 39555553-39572992 protein_coding
ENSDART00000125916 (ncl-202) 39556523-39572858 protein_coding
ENSDART00000130171 (ncl-002) 39555940-39572932 nonsense_mediated_decay
ENSDART00000141088 (ncl-004) 39557910-39558724 retained_intron
ENSDART00000147402 (ncl-003) 39557003-39564675 processed_transcript
ENSDARG00000038489 (b3gnt7)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 		ENSDART00000056169 (b3gnt7-001) 39538939-39543702 protein_coding
ENSDART00000134031 (b3gnt7-002) 39538921-39541849 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004KZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156966-ENSG00000115053 CGP 9606 2:231395543-231483641
GeneTranscriptPositionBiotype
ENSG00000115053 (NCL)
nucleolin 		ENST00000322723 (NCL-001) 231453531-231464594 protein_coding
ENST00000356936 (NCL-015) 231455442-231458357 protein_coding
ENST00000417652 (NCL-011) 231461607-231464199 protein_coding
ENST00000436894 (NCL-013) 231461681-231463693 protein_coding
ENST00000453992 (NCL-012) 231461651-231464180 protein_coding
ENST00000454824 (NCL-010) 231461594-231464207 protein_coding
ENST00000461347 (NCL-002) 231454908-231483641 retained_intron
ENST00000466274 (NCL-016) 231456010-231457410 retained_intron
ENST00000484328 (NCL-009) 231462992-231464379 retained_intron
ENST00000494618 (NCL-014) 231457426-231460725 retained_intron
ENSG00000156966 (B3GNT7)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 		ENST00000287590 (B3GNT7-001) 231395543-231401164 protein_coding
ENST00000479618 (B3GNT7-003) 231397176-231398257 processed_transcript
ENSG00000172799 (ZBTB8OSP2)
zinc finger and BTB domain containing 8 opposite strand pseudogene 2 		ENST00000423890 (ZBTB8OSP2-001) 231433923-231434426 processed_pseudogene
ENSG00000202400 (SNORD82)
small nucleolar RNA, C/D box 82 		ENST00000365530 (SNORD82-201) 231460371-231460440 snoRNA
ENSG00000206885 (SNORA75)
small nucleolar RNA, H/ACA box 75 		ENST00000384158 (SNORA75-201) 231455800-231455936 snoRNA
ENSG00000207280 (SNORD20)
small nucleolar RNA, C/D box 20 		ENST00000384550 (SNORD20-201) 231456444-231456523 snoRNA
ENSG00000230047 (AC017104.4)
 ENST00000417000 (AC017104.4-001) 231437101-231437421 processed_pseudogene
ENSG00000233538 (AC017104.2)
 ENST00000370380 (AC017104.2-001) 231452195-231453153 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004KZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000079445-ENSMUSG00000026234 CGP 10090 1:86302832-86359400
GeneTranscriptPositionBiotype
ENSMUSG00000026234 (Ncl)
nucleolin 		ENSMUST00000027438 (Ncl-001) 86344719-86359400 protein_coding
ENSMUST00000185676 (Ncl-002) 86350495-86359364 retained_intron
ENSMUST00000185785 (Ncl-003) 86357312-86358969 protein_coding
ENSMUST00000186050 (Ncl-005) 86350564-86352063 retained_intron
ENSMUST00000188682 (Ncl-006) 86350496-86351211 retained_intron
ENSMUST00000189504 (Ncl-004) 86351101-86352306 retained_intron
ENSMUSG00000079445 (B3gnt7)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 		ENSMUST00000113306 (B3gnt7-001) 86303234-86307305 protein_coding
ENSMUST00000188695 (B3gnt7-003) 86303531-86305849 protein_coding
ENSMUST00000189618 (B3gnt7-002) 86302832-86304707 retained_intron
ENSMUSG00000099644 (RP23-299F18.1)
predicted gene 28626 		ENSMUST00000187004 (RP23-299F18.1-001) 86303195-86304059 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KZ_0001ENSDARG00000002710ENSDART00000017188ENSDART00000124698ENSDART00000125916ENSDART00000130171ENSDART00000141088ENSDART00000147402ENSDARG00000038489ENSDART00000056169ENSDART00000134031CIL_0004KZ_0002ENSG00000115053ENST00000322723ENST00000356936ENST00000417652ENST00000436894ENST00000453992ENST00000454824ENST00000461347ENST00000466274ENST00000484328ENST00000494618ENSG00000156966ENST00000287590ENST00000479618ENSG00000172799ENST00000423890ENSG00000202400ENST00000365530ENSG00000206885ENST00000384158ENSG00000207280ENST00000384550ENSG00000230047ENST00000417000ENSG00000233538ENST00000370380CIL_0004KZ_0003ENSMUSG00000026234ENSMUST00000027438ENSMUST00000185676ENSMUST00000185785ENSMUST00000186050ENSMUST00000188682ENSMUST00000189504ENSMUSG00000079445ENSMUST00000113306ENSMUST00000188695ENSMUST00000189618ENSMUSG00000099644ENSMUST00000187004
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004KZ_0001ENSDARG00000002710ENSDART00000017188ENSDART00000124698ENSDART00000125916ENSDART00000130171ENSDARG00000038489ENSDART00000056169CIL_0004KZ_0002ENSG00000115053ENST00000322723ENST00000461347ENST00000494618ENSG00000156966ENST00000287590ENSG00000172799ENST00000423890ENSG00000202400ENST00000365530ENSG00000206885ENST00000384158ENSG00000207280ENST00000384550ENSG00000230047ENST00000417000ENSG00000233538ENST00000370380CIL_0004KZ_0003ENSMUSG00000026234ENSMUST00000027438ENSMUST00000185676ENSMUSG00000079445ENSMUST00000113306ENSMUST00000188695ENSMUST00000189618ENSMUSG00000099644ENSMUST00000187004
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002710 ENSDART00000017188 N/A N/A N/A 31.373±21.25 N/A N/A 132.637±86.09 192.344±57.24 23.087±0.00 N/A 27.722±0.00 N/A N/A N/A
ENSDART00000124698 N/A N/A N/A 24.352±3.05 N/A N/A 21.155±2.91 37.386±0.00 12.455±0.00 N/A 6.902±0.00 N/A N/A N/A
ENSDART00000125916 N/A N/A N/A 24.462±0.00 N/A N/A 15.538±0.00 38.463±0.00 11.807±0.00 N/A N/A N/A N/A N/A
ENSDART00000130171 N/A N/A N/A 4.793±0.68 N/A N/A N/A 31.941±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000141088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000038489 ENSDART00000056169 N/A N/A N/A 1.584±0.34 N/A N/A 1.344±0.36 1.161±0.04 0.069±0.00 N/A 0.602±0.00 N/A N/A N/A
ENSDART00000134031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115053 ENST00000322723 12.811±0.00 25.364±0.00 6.608±0.00 8.982±7.74 8.460±4.74 9.727±5.79 2.063±0.00 7.180±4.24 6.895±1.63 6.133±4.35 7.645±5.62 28.267±21.69 38.242±38.47 18.891±1.73
ENST00000356936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000417652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461347 N/A N/A N/A N/A N/A N/A 0.590±0.00 N/A N/A N/A N/A N/A 90.269±0.00 N/A
ENST00000466274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494618 N/A N/A 7.704±0.00 3.827±0.00 20.335±0.00 16.847±0.00 2.278±0.00 6.424±0.00 N/A 8.142±0.00 4.996±0.00 12.272±0.00 N/A N/A
ENSG00000156966 ENST00000287590 0.661±0.00 1.907±0.00 0.092±0.00 3.083±0.00 1.619±0.09 3.636±0.00 1.700±0.00 1.224±0.00 0.398±0.00 8.905±8.27 0.024±0.00 8.057±4.93 13.517±6.06 2.244±1.51
ENST00000479618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172799 ENST00000423890 0.025±0.00 0.026±0.00 N/A N/A 0.026±0.00 0.642±0.00 N/A N/A 0.366±0.00 N/A N/A 0.138±0.00 N/A 1.908±0.00
ENSG00000202400 ENST00000365530 N/A 0.876±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206885 ENST00000384158 0.495±0.00 1.413±0.00 N/A 9.848±0.00 0.746±0.00 0.232±0.00 3.734±0.00 0.125±0.00 21.612±0.00 11.588±10.89 N/A 35.455±34.57 0.315±0.00 1.121±0.00
ENSG00000207280 ENST00000384550 N/A 0.925±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.071±0.00 1.347±0.00 1.037±0.00
ENSG00000230047 ENST00000417000 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.09
ENSG00000233538 ENST00000370380 0.609±0.00 1.390±0.00 N/A 0.772±0.00 1.077±0.00 0.179±0.00 0.115±0.00 1.503±0.00 0.463±0.00 0.341±0.00 0.243±0.00 0.315±0.17 N/A 0.545±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026234 ENSMUST00000027438 2.395±1.50 3.699±1.00 4.331±0.03 5.690±0.73 0.950±0.53 1.542±0.39 1.714±0.42 2.074±0.46 4.870±5.60 1.776±0.55 4.266±0.95 4.990±4.09 8.266±3.85 0.676±0.01
ENSMUST00000185676 4.360±2.91 29.247±5.06 14.488±0.00 32.394±32.71 8.856±4.06 9.281±1.88 4.760±0.71 7.785±1.01 38.331±46.42 8.271±0.40 19.758±6.74 47.140±78.65 177.314±179.13 26.671±45.99
ENSMUST00000185785 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189504 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000079445 ENSMUST00000113306 1.116±0.93 0.136±0.05 0.784±0.23 1.942±0.21 2.656±0.34 351.602±41.74 0.208±0.04 3.688±0.33 0.512±0.49 6.065±1.10 0.026±0.00 5.814±2.30 23.876±19.32 0.133±0.06
ENSMUST00000188695 N/A 0.061±0.00 N/A 0.099±0.00 N/A N/A N/A N/A 0.032±0.00 N/A 0.025±0.00 0.125±0.00 N/A 0.011±0.00
ENSMUST00000189618 N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099644 ENSMUST00000187004 N/A 0.304±0.14 N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00

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