C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleolin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115053 NCL 9606 - 2:231453531-231483641 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000322723 NCL-001 231453531-231464594 protein_coding
  ENST00000356936 NCL-015 231455442-231458357 protein_coding
  ENST00000417652 NCL-011 231461607-231464199 protein_coding
  ENST00000436894 NCL-013 231461681-231463693 protein_coding
  ENST00000453992 NCL-012 231461651-231464180 protein_coding
  ENST00000454824 NCL-010 231461594-231464207 protein_coding
  ENST00000461347 NCL-002 231454908-231483641 retained_intron
  ENST00000466274 NCL-016 231456010-231457410 retained_intron
  ENST00000484328 NCL-009 231462992-231464379 retained_intron
  ENST00000494618 NCL-014 231457426-231460725 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322723ENST00000461347ENST00000494618
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322723 12.811±0.00 25.364±0.00 6.608±0.00 8.982±7.74 8.460±4.74 9.727±5.79 2.063±0.00 7.180±4.24 6.895±1.63 6.133±4.35 7.645±5.62 28.267±21.69 38.242±38.47 18.891±1.73
ENST00000461347 N/A N/A N/A N/A N/A N/A 0.590±0.00 N/A N/A N/A N/A N/A 90.269±0.00 N/A
ENST00000494618 N/A N/A 7.704±0.00 3.827±0.00 20.335±0.00 16.847±0.00 2.278±0.00 6.424±0.00 N/A 8.142±0.00 4.996±0.00 12.272±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0004KZ CIL_0004KZ_0002 CGP 2:231395543-231483641
CIL_00076N CIL_00076N_0001 CGP 2:231453531-231530495

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001525 IDA angiogenesis
GO:0003676 IEA nucleic acid binding
GO:0003723 IDA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IEA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005938 IDA cell cortex
GO:0008022 IPI protein C-terminus binding
GO:0016020 IDA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0042162 IDA telomeric DNA binding
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome
GO:1901838 IMP positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002710 ncl nucleolin protein_coding Danio_rerio
ENSMUSG00000026234 Ncl nucleolin protein_coding Mus_musculus

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