C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selenocysteine lyase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153621 Scly-002 ENSMUSG00000026307 10090 + 1:91298370-91311330 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLungMuscleOvaryPlacentaTestisENSMUST00000153621
Transcript ID Adipose Brain Breast Heart Lung Muscle Ovary Placenta Testis
ENSMUST00000153621 0.975±0.00 0.492±0.00 1.529±0.05 0.604±0.00 1.564±0.00 0.434±0.00 1.057±0.23 1.596±0.42 1.312±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003NI CIL_0003NI_0002 CGP 1:91250304-91321075
CIL_0004L3 CIL_0004L3_0003 CGP 1:91298338-91348306

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254663 SCLY-001 protein_coding Homo_sapiens 0 676
ENST00000409736 SCLY-003 protein_coding Homo_sapiens 0 676
ENST00000416757 SCLY-013 protein_coding Homo_sapiens 0 329
ENST00000443532 SCLY-012 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000446202 SCLY-009 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000449891 UBE2F-SCLY-001 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000480357 SCLY-002 retained_intron Homo_sapiens 0 329
ENST00000480859 SCLY-015 processed_transcript Homo_sapiens 0 346
ENST00000482031 SCLY-016 retained_intron Homo_sapiens 0 577

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