C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: selenocysteine lyase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027532 Scly-001 ENSMUSG00000026307 10090 + 1:91298338-91321075 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027532
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027532 6.355±1.06 4.124±2.48 9.975±0.16 4.215±0.75 5.529±2.38 3.945±1.42 4.182±0.44 41.199±6.18 27.281±11.71 8.652±2.84 3.337±0.83 2.837±1.22 13.713±5.73 7.603±3.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D3 CIL_0008D3_0002 VISTA 1:90908179-91512308
CIL_0003NI CIL_0003NI_0002 CGP 1:91250304-91321075
CIL_0004L3 CIL_0004L3_0003 CGP 1:91298338-91348306

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001887 IMP selenium compound metabolic process
GO:0003824 IEA catalytic activity
GO:0005737 IEA cytoplasm
GO:0006629 IMP lipid metabolic process
GO:0009000 IEA selenocysteine lyase activity
GO:0016740 IEA transferase activity
GO:0030170 IEA pyridoxal phosphate binding
GO:0032868 IMP response to insulin
GO:1900408 IMP negative regulation of cellular response to oxidative stress

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254663 SCLY-001 protein_coding Homo_sapiens 0 1059
ENST00000409736 SCLY-003 protein_coding Homo_sapiens 0 730
ENST00000416757 SCLY-013 protein_coding Homo_sapiens 0 329
ENST00000443532 SCLY-012 nonsense_mediated_decay Homo_sapiens 0 582
ENST00000446202 SCLY-009 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000449891 UBE2F-SCLY-001 nonsense_mediated_decay Homo_sapiens 0 1057
ENST00000480357 SCLY-002 retained_intron Homo_sapiens 0 329
ENST00000480859 SCLY-015 processed_transcript Homo_sapiens 0 346
ENST00000482031 SCLY-016 retained_intron Homo_sapiens 0 577

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