C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026994 Galnt3 10090 - 2:66082766-66124994 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028378 Galnt3-001 66082766-66124994 protein_coding
  ENSMUST00000150793 Galnt3-003 66091162-66094071 processed_transcript
  ENSMUST00000153563 Galnt3-002 66095641-66102483 processed_transcript
  ENSMUST00000155453 Galnt3-004 66084086-66095224 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028378ENSMUST00000153563ENSMUST00000155453
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028378 0.180±0.17 0.046±0.03 1.040±0.16 0.127±0.02 0.474±0.18 5.417±5.40 0.030±0.02 2.223±0.43 0.193±0.10 0.803±0.17 0.061±0.04 0.783±0.09 2.570±0.45 10.848±3.59
ENSMUST00000153563 N/A 0.448±0.19 N/A N/A 0.902±0.00 N/A 0.157±0.09 N/A 0.105±0.00 N/A 0.107±0.00 N/A N/A N/A
ENSMUST00000155453 N/A 0.451±0.00 N/A N/A 1.167±0.45 N/A 0.074±0.03 7.863±1.32 0.216±0.14 N/A 0.089±0.03 1.657±0.44 3.506±0.25 23.693±1.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0003S2 CIL_0003S2_0003 CGP 2:65845767-66124994
CIL_0006CI CIL_0006CI_0002 CGP 2:66082766-66256617

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005509 IEA calcium ion binding
GO:0005794 IEA Golgi apparatus
GO:0016021 IEA integral component of membrane
GO:0018242 IEA protein O-linked glycosylation via serine
GO:0018243 IEA protein O-linked glycosylation via threonine
GO:0030145 IEA manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063724 GALNT3 Uncharacterized protein protein_coding Danio_rerio
ENSG00000115339 GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 protein_coding Homo_sapiens

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