C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028378 Galnt3-001 ENSMUSG00000026994 10090 - 2:66082766-66124994 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028378
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028378 0.180±0.17 0.046±0.03 1.040±0.16 0.127±0.02 0.474±0.18 5.417±5.40 0.030±0.02 2.223±0.43 0.193±0.10 0.803±0.17 0.061±0.04 0.783±0.09 2.570±0.45 10.848±3.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0003S2 CIL_0003S2_0003 CGP 2:65845767-66124994
CIL_0006CI CIL_0006CI_0002 CGP 2:66082766-66256617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005509 IEA calcium ion binding
GO:0005794 IEA Golgi apparatus
GO:0016021 IEA integral component of membrane
GO:0018242 IEA protein O-linked glycosylation via serine
GO:0018243 IEA protein O-linked glycosylation via threonine
GO:0030145 IEA manganese ion binding
GO:0030246 IEA carbohydrate binding
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392701 GALNT3-001 protein_coding Homo_sapiens 0 3127
ENST00000409882 GALNT3-010 protein_coding Homo_sapiens 0 1930
ENST00000412248 GALNT3-004 protein_coding Homo_sapiens 0 1692
ENST00000414977 GALNT3-002 protein_coding Homo_sapiens 0 303
ENST00000431484 GALNT3-005 protein_coding Homo_sapiens 0 416
ENST00000437849 GALNT3-007 nonsense_mediated_decay Homo_sapiens 0 752
ENST00000463254 GALNT3-008 retained_intron Homo_sapiens 0 584

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