C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 39 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027291 Vps39 10090 - 2:120316461-120353137 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028752 Vps39-002 120316461-120353125 protein_coding
  ENSMUST00000102501 Vps39-001 120316461-120353137 protein_coding
  ENSMUST00000126526 Vps39-007 120348467-120353125 processed_transcript
  ENSMUST00000129857 Vps39-003 120316811-120353121 processed_transcript
  ENSMUST00000132476 Vps39-009 120325868-120333433 retained_intron
  ENSMUST00000133260 Vps39-010 120318027-120319582 retained_intron
  ENSMUST00000138854 Vps39-008 120338466-120344207 processed_transcript
  ENSMUST00000145193 Vps39-005 120319846-120323490 retained_intron
  ENSMUST00000147085 Vps39-004 120321855-120353109 retained_intron
  ENSMUST00000156296 Vps39-006 120343254-120353121 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028752ENSMUST00000102501ENSMUST00000129857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028752 4.367±1.58 2.548±0.38 7.289±0.39 10.575±4.24 3.527±0.63 2.686±0.00 3.796±0.43 5.295±0.90 3.896±0.95 3.381±0.67 0.982±0.15 5.894±3.27 5.343±2.68 2.477±0.81
ENSMUST00000102501 1.746±0.05 N/A 3.159±0.35 N/A N/A 1.820±0.53 0.920±0.00 N/A 1.346±0.13 N/A 4.601±0.37 4.114±0.70 1.483±0.32 0.794±0.10
ENSMUST00000129857 8.344±1.59 15.517±3.11 N/A 5.290±0.46 9.563±0.83 6.279±1.51 3.483±0.35 3.985±2.13 2.394±1.16 9.503±1.44 N/A 11.206±4.03 2.221±0.67 2.075±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PN CIL_0005PN_0002 CGP 2:120299957-120353137
CIL_0005PM CIL_0005PM_0002 CGP 2:120316461-120404113

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005768 IEA endosome
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030897 IEA HOPS complex
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074471 vps39 vacuolar protein sorting 39 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000166887 VPS39 vacuolar protein sorting 39 homolog (S. cerevisiae) protein_coding Homo_sapiens

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