C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: vacuolar protein sorting 39 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133260 Vps39-010 ENSMUSG00000027291 10090 - 2:120318027-120319582 retained_intron

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PN CIL_0005PN_0002 CGP 2:120299957-120353137
CIL_0005PM CIL_0005PM_0002 CGP 2:120316461-120404113

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318006 VPS39-001 protein_coding Homo_sapiens 0 248
ENST00000348544 VPS39-002 protein_coding Homo_sapiens 0 241
ENST00000562258 VPS39-003 retained_intron Homo_sapiens 0 248
ENST00000562662 VPS39-011 retained_intron Homo_sapiens 0.0000000000005 79
ENST00000564994 VPS39-013 nonsense_mediated_decay Homo_sapiens 6e-33 145
ENST00000568755 VPS39-012 retained_intron Homo_sapiens 0.000000000000001 88

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