C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 39 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129857 Vps39-003 ENSMUSG00000027291 10090 - 2:120316811-120353121 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000129857
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000129857 8.344±1.59 15.517±3.11 5.290±0.46 9.563±0.83 6.279±1.51 3.483±0.35 3.985±2.13 2.394±1.16 9.503±1.44 11.206±4.03 2.221±0.67 2.075±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PN CIL_0005PN_0002 CGP 2:120299957-120353137
CIL_0005PM CIL_0005PM_0002 CGP 2:120316461-120404113

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318006 VPS39-001 protein_coding Homo_sapiens 0 3513
ENST00000348544 VPS39-002 protein_coding Homo_sapiens 0 3373
ENST00000561818 VPS39-009 retained_intron Homo_sapiens 0 327
ENST00000562258 VPS39-003 retained_intron Homo_sapiens 0 1149
ENST00000562662 VPS39-011 retained_intron Homo_sapiens 0 459
ENST00000563692 VPS39-010 processed_transcript Homo_sapiens 0 617
ENST00000564994 VPS39-013 nonsense_mediated_decay Homo_sapiens 5e-39 165
ENST00000568029 VPS39-006 retained_intron Homo_sapiens 0 359
ENST00000568357 VPS39-004 processed_transcript Homo_sapiens 0 196
ENST00000568755 VPS39-012 retained_intron Homo_sapiens 0 283
ENST00000570023 VPS39-007 retained_intron Homo_sapiens 0 403
ENST00000570062 VPS39-005 retained_intron Homo_sapiens 0 723

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