C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0005PM_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000166887-ENSG00000103978 | CGP | 9606 | 15:42158701-42273663  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000166887  (VPS39)vacuolar protein sorting 39 homolog (S. cerevisiae) |
ENST00000318006 (VPS39-001)
|
42158701-42208316 | protein_coding | |
|
ENST00000348544 (VPS39-002)
|
42160754-42208153 | protein_coding | ||
|
ENST00000561797 (VPS39-008)
|
42164605-42165753 | retained_intron | ||
|
ENST00000561818 (VPS39-009)
|
42163561-42164726 | retained_intron | ||
|
ENST00000562258 (VPS39-003)
|
42158716-42166219 | retained_intron | ||
|
ENST00000562662 (VPS39-011)
|
42161724-42162672 | retained_intron | ||
|
ENST00000563692 (VPS39-010)
|
42164785-42166875 | processed_transcript | ||
|
ENST00000564994 (VPS39-013)
|
42160431-42162052 | nonsense_mediated_decay | ||
|
ENST00000568029 (VPS39-006)
|
42169851-42179103 | retained_intron | ||
|
ENST00000568357 (VPS39-004)
|
42191261-42208307 | processed_transcript | ||
|
ENST00000568755 (VPS39-012)
|
42161719-42162557 | retained_intron | ||
|
ENST00000570023 (VPS39-007)
|
42173637-42178338 | retained_intron | ||
|
ENST00000570062 (VPS39-005)
|
42184192-42191170 | retained_intron | ||
|
ENST00000614932 (VPS39-014)
|
42158713-42161547 | retained_intron | ||
|
ENSG00000214013 (GANC) glucosidase, alpha; neutral C |
ENST00000318010 (GANC-001)
|
42274242-42356935 | protein_coding | |
|
ENST00000440615 (GANC-003)
|
42274242-42284389 | protein_coding | ||
|
ENST00000561871 (GANC-008)
|
42273233-42274510 | protein_coding | ||
|
ENST00000562170 (GANC-005)
|
42273286-42278592 | protein_coding | ||
|
ENST00000562859 (GANC-009)
|
42273295-42292826 | protein_coding | ||
|
ENST00000566442 (GANC-002)
|
42273658-42314833 | protein_coding | ||
|
ENST00000566690 (GANC-013)
|
42344695-42352078 | protein_coding | ||
|
ENST00000567421 (GANC-004)
|
42276346-42327495 | retained_intron | ||
|
ENST00000567596 (GANC-012)
|
42343342-42352108 | protein_coding | ||
|
ENST00000567784 (GANC-007)
|
42274244-42287722 | nonsense_mediated_decay | ||
|
ENST00000568687 (GANC-006)
|
42276272-42281112 | retained_intron | ||
|
ENST00000568953 (GANC-011)
|
42326301-42329504 | retained_intron | ||
|
ENST00000570013 (GANC-010)
|
42274264-42283902 | nonsense_mediated_decay | ||
| CIL_0005PM_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000027291-ENSMUSG00000033808 | CGP | 10090 | 2:120316461-120404113 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000027291 (Vps39) vacuolar protein sorting 39 (yeast) |
ENSMUST00000028752 (Vps39-002)
|
120316461-120353125 | protein_coding | |
|
ENSMUST00000102501 (Vps39-001)
|
120316461-120353137 | protein_coding | ||
|
ENSMUST00000126526 (Vps39-007)
|
120348467-120353125 | processed_transcript | ||
|
ENSMUST00000129857 (Vps39-003)
|
120316811-120353121 | processed_transcript | ||
|
ENSMUST00000132476 (Vps39-009)
|
120325868-120333433 | retained_intron | ||
|
ENSMUST00000133260 (Vps39-010)
|
120318027-120319582 | retained_intron | ||
|
ENSMUST00000138854 (Vps39-008)
|
120338466-120344207 | processed_transcript | ||
|
ENSMUST00000145193 (Vps39-005)
|
120319846-120323490 | retained_intron | ||
|
ENSMUST00000147085 (Vps39-004)
|
120321855-120353109 | retained_intron | ||
|
ENSMUST00000156296 (Vps39-006)
|
120343254-120353121 | processed_transcript | ||
|
ENSMUSG00000033808 (Tmem87a) transmembrane protein 87A |
ENSMUST00000090042 (Tmem87a-002)
|
120355312-120404069 | protein_coding | |
|
ENSMUST00000090046 (Tmem87a-001)
|
120355312-120404089 | protein_coding | ||
|
ENSMUST00000110729 (Tmem87a-003)
|
120363294-120404078 | protein_coding | ||
|
ENSMUST00000124806 (Tmem87a-005)
|
120355973-120404077 | processed_transcript | ||
|
ENSMUST00000136410 (Tmem87a-004)
|
120355316-120404095 | processed_transcript | ||
|
ENSMUST00000143182 (Tmem87a-006)
|
120381304-120404081 | retained_intron | ||
|
ENSMUST00000151740 (Tmem87a-007)
|
120380790-120404113 | processed_transcript | ||
|
ENSMUSG00000062646 (Ganc) glucosidase, alpha; neutral C |
ENSMUST00000043755 (Ganc-003)
|
120404224-120460850 | processed_transcript | |
|
ENSMUST00000127367 (Ganc-014)
|
120452579-120460345 | retained_intron | ||
|
ENSMUST00000131523 (Ganc-010)
|
120404202-120457252 | processed_transcript | ||
|
ENSMUST00000132835 (Ganc-007)
|
120411413-120436739 | retained_intron | ||
|
ENSMUST00000135074 (Ganc-001)
|
120404768-120461700 | protein_coding | ||
|
ENSMUST00000136993 (Ganc-004)
|
120404980-120460866 | processed_transcript | ||
|
ENSMUST00000143409 (Ganc-006)
|
120404338-120415651 | processed_transcript | ||
|
ENSMUST00000145134 (Ganc-013)
|
120423501-120431015 | processed_transcript | ||
|
ENSMUST00000152437 (Ganc-002)
|
120406114-120460223 | processed_transcript | ||
|
ENSMUST00000153660 (Ganc-005)
|
120404210-120424415 | processed_transcript | ||
|
ENSMUST00000154404 (Ganc-011)
|
120404314-120419483 | processed_transcript | ||
|
ENSMUST00000154435 (Ganc-012)
|
120404774-120414357 | processed_transcript | ||
|
ENSMUST00000154574 (Ganc-008)
|
120403896-120423659 | processed_transcript | ||
|
ENSMUST00000154963 (Ganc-009)
|
120404201-120419485 | processed_transcript | ||
Expression Patterns
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