C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vacuolar protein sorting 39 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166887 VPS39 9606 - 15:42158701-42208316 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318006 VPS39-001 42158701-42208316 protein_coding
  ENST00000348544 VPS39-002 42160754-42208153 protein_coding
  ENST00000561797 VPS39-008 42164605-42165753 retained_intron
  ENST00000561818 VPS39-009 42163561-42164726 retained_intron
  ENST00000562258 VPS39-003 42158716-42166219 retained_intron
  ENST00000562662 VPS39-011 42161724-42162672 retained_intron
  ENST00000563692 VPS39-010 42164785-42166875 processed_transcript
  ENST00000564994 VPS39-013 42160431-42162052 nonsense_mediated_decay
  ENST00000568029 VPS39-006 42169851-42179103 retained_intron
  ENST00000568357 VPS39-004 42191261-42208307 processed_transcript
  ENST00000568755 VPS39-012 42161719-42162557 retained_intron
  ENST00000570023 VPS39-007 42173637-42178338 retained_intron
  ENST00000570062 VPS39-005 42184192-42191170 retained_intron
  ENST00000614932 VPS39-014 42158713-42161547 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318006ENST00000348544ENST00000562258ENST00000568357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318006 12.321±0.00 13.274±0.00 2.939±0.00 12.455±5.32 9.045±6.31 5.942±3.13 7.030±5.25 11.872±0.00 3.513±0.43 4.551±0.78 N/A 7.717±5.87 9.685±2.52 13.407±1.46
ENST00000348544 N/A N/A N/A 2.636±0.00 2.568±0.00 3.026±0.00 3.023±0.00 2.001±0.00 2.969±0.00 2.626±0.00 2.006±0.00 3.367±0.00 N/A N/A
ENST00000562258 N/A N/A N/A N/A 0.886±0.00 N/A N/A N/A N/A N/A N/A 0.920±0.00 N/A N/A
ENST00000568357 N/A N/A N/A N/A N/A N/A N/A 4.930±0.00 11.074±0.00 9.389±0.00 N/A 9.703±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PN CIL_0005PN_0001 CGP 15:42139034-42208316
CIL_0005PM CIL_0005PM_0001 CGP 15:42158701-42273663

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005515 IEA protein binding
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030897 IDA HOPS complex
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074471 vps39 vacuolar protein sorting 39 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000027291 Vps39 vacuolar protein sorting 39 (yeast) protein_coding Mus_musculus

Loading