C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuolar protein sorting 39 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028752 Vps39-002 ENSMUSG00000027291 10090 - 2:120316461-120353125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028752
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028752 4.367±1.58 2.548±0.38 7.289±0.39 10.575±4.24 3.527±0.63 2.686±0.00 3.796±0.43 5.295±0.90 3.896±0.95 3.381±0.67 0.982±0.15 5.894±3.27 5.343±2.68 2.477±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PN CIL_0005PN_0002 CGP 2:120299957-120353137
CIL_0005PM CIL_0005PM_0002 CGP 2:120316461-120404113

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005083 IEA small GTPase regulator activity
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318006 VPS39-001 protein_coding Homo_sapiens 0 3707
ENST00000348544 VPS39-002 protein_coding Homo_sapiens 0 3373
ENST00000561818 VPS39-009 retained_intron Homo_sapiens 0 327
ENST00000562258 VPS39-003 retained_intron Homo_sapiens 0 1149
ENST00000562662 VPS39-011 retained_intron Homo_sapiens 0 459
ENST00000563692 VPS39-010 processed_transcript Homo_sapiens 0 617
ENST00000564994 VPS39-013 nonsense_mediated_decay Homo_sapiens 5e-39 165
ENST00000568029 VPS39-006 retained_intron Homo_sapiens 0 359
ENST00000568357 VPS39-004 processed_transcript Homo_sapiens 0 278
ENST00000568755 VPS39-012 retained_intron Homo_sapiens 0 283
ENST00000570023 VPS39-007 retained_intron Homo_sapiens 0 403
ENST00000570062 VPS39-005 retained_intron Homo_sapiens 0 723

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